| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1054 |
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| Symbol | |
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| ID | 5198756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 1174565 |
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| End bp | 1176574 |
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| Gene Length | 2010 bp |
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| Protein Length | 669 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640580599 |
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| Product | quinoprotein glucose dehydrogenase |
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| Protein accession | YP_001261558 |
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| Protein GI | 148553976 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.236917 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGGG GGCGTCGGCT GGGGAGGGCG GCGCTCGCCG TCGTGGCGCT GCTGCTGCTC
GCCTATGCGG TCGCGTGGGG CGTCAGGCTG CTGCCGCCGC TCGGGCCGCT GCGGATCACC
ACCCATTCCC CGGCGGATAC GCCGTGGGAC CAGTGGGGCG CGACCGCCGG CGGCACGCGC
TTCACCCCGG CCGCCCAGAT CACCCCCGGC AATGTCGCGC ATCTGAGGGT CGCCTGGCGC
TATTCGACCG GCGAGCTCGC GCGCCGGCCG GAGGGCATGC AGGTCAACAG CACCAACGAG
ACCACGCCGA TCCTGGCGGC CGGGTCGCTC ATCACCTGCA CGCCGTTCGG TCGGGTGATC
GCGCTCGATC CGGCGACGGG GCGCGAGAAA TGGACCTATG ACGCGAAGGT CGATCGCAGC
TTCAAGCTGC CCGACCAATA TATCTGCCGG GGCGTCTCGC AATGGCGCGA CGCCCGCGCG
GCCGATCCGG CGGGGATGTG CGCGACCCGC ATCATCCTCG CCACCGTCGA CATGCGCGTC
ATCGCGCTCG ACGCCCGGAC CGGGCGGCCC TGCGCGGGCT TCGGAGAGGG CGGCACGGTG
CGGGTCGATC CCGGCAAGCT CCACCATGTC GGCGAGGTCA AGCTGGCCGC GCCGGCGGCG
ATCGTGCGCG ACAGAATCGT CATCGGCACC TCGGTGCTCG ACAATGTCCG CGCCAACGCG
CCGCGCGGCA TCATCCGCGC CTTCGACGCG CGATCGGGCC GGGAGATCTG GACCTTCGAC
CCGATCCCGC AGCAGGGCGG GCCCGATCGC GACTGGATGG GCGACAGCCG TCGCACCACC
GGCGCCGCCA ATGTCTGGTC GGTGATATCG GGCGATCCCG AGCTCGACAT GGTCTACCTG
CCGACGTCGA GCGCCTCGCC CGATTATTAT GGCGGCCTGC GCCCCGGCGA CAATCGCCAC
GCCAACAGCG TCGTCGCGCT CGACGCGGCG ACCGGCCGGC TGGTCTGGGC CCGGCAGCTC
ATCCACCACG ACATCTGGGA CTATGACATC CCGGCCCAGC CGACGCTGGT CGACATCGAT
CGCGGCGGCC GGCGCATCCC CGCGCTCGTC CAGCCGACCA AGCAGGGCTA TGTCTTCGTC
TTCGACCGGC GCACCGGCGC GCCGCTCTTC CCGATCGACG AGGTGCCGGT GCCGCAGGGC
GGCGTCCCCG GCGAATGGCT GTCGCCGACC CAGCCGCGCC CGCGCCTGCC CAGGCCGATC
GTCCCGCAGA AGATCACCCC CGACCAGGCC TGGGGCTTCA CCCCCTGGGA CAAGGCGAAA
TGCCGCGACC TGATCGCGCG CTATCGCTCC GAAGGATTGT TCACGCCGAT CACCGAGCGC
GGGACGATCA CCTATCCGGC CGCCTCGGGC GGCGCCAACT GGGGGGCTGG TGCGATCGAT
CCGGCGCGGC AGGTCTTCTT CATCAACTCC AGCCGGGTCG CGTCGGTGAT CAGGCTGCGC
AAGCGCAAGC CCGGCGGCAG CGGCACCGTC CAGCTGTCGG CGACCGAGGA TGTCTCGCCG
ATGGCGGGCA CGCCCTATGA GGTGAAGCGC GAATGGCTGC TGTCGCCGTT CGGCGCGCCC
TGCACCCCGC CGCCCTGGGG CGGGCTGACC GCGATCGACC TGAAAACCGG CGCGACCTTG
TGGGACGTGC CGCTCGGCAC GATCAACGAC AGGCTGCCGA TCCCGTTGCC GTTCGACGTC
GCGCTCGGCA CGCCCAATAT CGGCGGGCCG GTGGCGACGG CGGGCGGGGT GTTGTTCATC
GCCGCGACGA TGGACCGCCA TCTGCGCGCG ATCGACATGC GGACCGGCAA GGAATTGTGG
CGCGACCGGC TGCCCGGCGG CAGCCAGACC ACGCCGATGA GCTACATGGC CGGCGGCCGC
CAATATGTGG TGGTCGCGTC CGGCCAGCAT ATGTGGTTCC AGACGCCGCG CTCGGACGAG
ATCGTCGCCT ATGCCTTGCC GATGAAGTGA
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| Protein sequence | MARGRRLGRA ALAVVALLLL AYAVAWGVRL LPPLGPLRIT THSPADTPWD QWGATAGGTR
FTPAAQITPG NVAHLRVAWR YSTGELARRP EGMQVNSTNE TTPILAAGSL ITCTPFGRVI
ALDPATGREK WTYDAKVDRS FKLPDQYICR GVSQWRDARA ADPAGMCATR IILATVDMRV
IALDARTGRP CAGFGEGGTV RVDPGKLHHV GEVKLAAPAA IVRDRIVIGT SVLDNVRANA
PRGIIRAFDA RSGREIWTFD PIPQQGGPDR DWMGDSRRTT GAANVWSVIS GDPELDMVYL
PTSSASPDYY GGLRPGDNRH ANSVVALDAA TGRLVWARQL IHHDIWDYDI PAQPTLVDID
RGGRRIPALV QPTKQGYVFV FDRRTGAPLF PIDEVPVPQG GVPGEWLSPT QPRPRLPRPI
VPQKITPDQA WGFTPWDKAK CRDLIARYRS EGLFTPITER GTITYPAASG GANWGAGAID
PARQVFFINS SRVASVIRLR KRKPGGSGTV QLSATEDVSP MAGTPYEVKR EWLLSPFGAP
CTPPPWGGLT AIDLKTGATL WDVPLGTIND RLPIPLPFDV ALGTPNIGGP VATAGGVLFI
AATMDRHLRA IDMRTGKELW RDRLPGGSQT TPMSYMAGGR QYVVVASGQH MWFQTPRSDE
IVAYALPMK
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