| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0899 |
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| Symbol | |
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| ID | 5200540 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 989579 |
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| End bp | 991873 |
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| Gene Length | 2295 bp |
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| Protein Length | 764 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640580445 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001261404 |
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| Protein GI | 148553822 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00548484 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.114309 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTATG CGCACCGCTC GGTAGGGGCG GTTATCGCGA TGGCGTCCCT TGTCGGGGTG
GCCGCCCATG CCAAGGGCGT CGGGGCGAAA GAAGAGGGAT ATGGTACGGC CGCCGTCGAA
ACCCTCGAAG CCGATGCGGG AGATGCCATC GTCGTCACCG CGCAGCGCCG CGTGCAGAAA
TTGCAGGATG TCGGCATCGC GGTAAGCGCA TTCAGCGGCG AGCAGTTGCG TACCCGCCAG
ATCTCCAGCA GCATCGACGT CGCACGGATG ACGCCCGGCG TCTTCGCTTC GTCCTCGAAC
GGTGGGCAAA CCGCCAGCAT TTCCATTCGC GGCGTGACCC AGAACGACAG CTCGGACGCC
GTCGAGGGTC CCGTTGCCGT CTATGTGGAC GAAACCTACG TCCCCAGCCT GCAGGGCCAG
GGCTTCGGTC TCTTCGACAT CGAGCGCGTC GAGGCTCTCA AGGGGCCGCA GGGCACGTTG
TTCGGCCGCA ATGCCACGGG CGGGCTCGTC AACTTCGTGA TCGCCAAACC GTCCGACACG
GTGACGGGCT ACGCGAACGG CAGCTATGGG AGCTTCGACA GCGTCAAGCT GGAAGGCGCG
ATCGGCGGGC CGATCGCCGA AACGGTCCAG GGGCGCATTT CGCTTCTCTA CAATCGCAAC
AATGGCTGGT TGAAGAACCT GTATCCGGGA AAGCCGGACG TCGGCGGAGA GGATACATTG
GGCGGCCGCG CCCAGCTGCA ATGGCAAGCG ACGGACGCGC TCAAGGTGCG GGCGACCGCT
TCCGCCGTGC GGAGCGATCT GTCCACCGGC GCCTATAACT CCATTTCGAC GCAGCCCGTG
TTCGACGGTC AGGGACGCGT GGTCGGTGCG GACAGGGTCT CCGGGCCGAC GGCGCTGGGC
TTTACGCCGC TTCCCGGCAG CAGGCTGGAG GTCAACCACG ACTTCGCCTG TTCCGATTGT
GGCCGCACGA GGCTTTATGA CGCGGCGCTC CACGTCGATT ACGATGCCGG GGGCGCCCAG
ATCAGCGCGA TCACCAACTG GAAGCGCATC ACCAAGGCCC TGCTGATCGA CGTGGACAGT
TCGCCCGTCA ATTTGGTGGA CGTGGGCCAG AACGCCCAGA CGGAGAGCTT CTCGCAGGAG
CTTCGCGCCA CCGGGAAGGC CGACAGGGCC GTCTGGAACC TCGGCGTCTA TTATCTGCAG
ATACACACGC TCGCCCAGAT GGGCTTTCTC GCCCGACCCA ATGGCATACT GGCGGGCGCG
CTGGGTGTTT CCGGCACCGG CGCTGATCTC GCCAATCTCC AGGACCTCTG GACGCGGTCA
TTCTCCGGTT TCGGGCAGAT CGAATATAAG CTCGCGCCCA GACTGAGCGG CACGATCGGC
CTCCGCGTCA TTCACGAATG GCAGCGCTAC GATTTCCAAT CGAGCCAGTT CCAGAACCAG
AATGACTACA AGCTGGATAC CGCCATCGCG GTGGCCACGC TTCAGCCTTC CTATGCGAAC
AAGCGGAGCG ATAGTTTCTG GGCGGGCAAG GCCGCGCTCG AATATCATGC CAATCGCGAC
ATGCTGTTGT ACGCCTCGAT CAATCGCGGG GCGAAGGGCG GCAACTACAA CTCCAAATTG
CCCGATGGAA GTCCGCCGCT CTCGCCGGAC GAGTTCGCCT ACAAGGGCGA AACGCTGCTC
GCTTATGAGG GCGGCATGAA GTCGACGTGG CTGGATGGAA AGGCCACGTT CAACCTGTTG
GGGTTCATCT ACGATTATTC CAATTACCAG GCCTTCACCT TTTCCAACGC CTCCGGCTTC
GTGCAGAACA GGGATGCGAA CCTCTATGGC GGCGAGGCCG AGTTCACCCT TCGGCCGGTC
GAGGGCCTGG AACTGAGCGG CGGCCTCTCG CTGCTGCATG CCAAGGTCAA GAACGTGCAG
GTCGCGACCG GTGTCTATAA AGACGTGCGG CCGACATTCG CCCCGAAGCG GCAGGCCAAC
GGGCGCATCA GCTATCGTCC TCCCCTGGAG GTCGCCGGCG GCCACATCAA CCTGGCCGTC
GATGGCTATT CGACATCGTC CTTCTACCAG AACATCCGCA ATTTCGCGGC GCACAAGATC
AGCGGCCACA CGATCTTCGG TGCGCAGGTC GGATGGGAGA GCGCGTCGGG CTTCTCGCTG
ACCGGCGCCG TATCCAACCT GTTCGACAAG CGATACGAGA TCACGGGCTT CGATCTGTCG
ACGCTTTGCG GCTGCAGCGA GGTTGCCTAC GGCAAGCCGC GCTGGTGGAC GATTTCCGCG
GGATTTCGCT TCTGA
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| Protein sequence | MNYAHRSVGA VIAMASLVGV AAHAKGVGAK EEGYGTAAVE TLEADAGDAI VVTAQRRVQK
LQDVGIAVSA FSGEQLRTRQ ISSSIDVARM TPGVFASSSN GGQTASISIR GVTQNDSSDA
VEGPVAVYVD ETYVPSLQGQ GFGLFDIERV EALKGPQGTL FGRNATGGLV NFVIAKPSDT
VTGYANGSYG SFDSVKLEGA IGGPIAETVQ GRISLLYNRN NGWLKNLYPG KPDVGGEDTL
GGRAQLQWQA TDALKVRATA SAVRSDLSTG AYNSISTQPV FDGQGRVVGA DRVSGPTALG
FTPLPGSRLE VNHDFACSDC GRTRLYDAAL HVDYDAGGAQ ISAITNWKRI TKALLIDVDS
SPVNLVDVGQ NAQTESFSQE LRATGKADRA VWNLGVYYLQ IHTLAQMGFL ARPNGILAGA
LGVSGTGADL ANLQDLWTRS FSGFGQIEYK LAPRLSGTIG LRVIHEWQRY DFQSSQFQNQ
NDYKLDTAIA VATLQPSYAN KRSDSFWAGK AALEYHANRD MLLYASINRG AKGGNYNSKL
PDGSPPLSPD EFAYKGETLL AYEGGMKSTW LDGKATFNLL GFIYDYSNYQ AFTFSNASGF
VQNRDANLYG GEAEFTLRPV EGLELSGGLS LLHAKVKNVQ VATGVYKDVR PTFAPKRQAN
GRISYRPPLE VAGGHINLAV DGYSTSSFYQ NIRNFAAHKI SGHTIFGAQV GWESASGFSL
TGAVSNLFDK RYEITGFDLS TLCGCSEVAY GKPRWWTISA GFRF
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