Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0794 |
Symbol | |
ID | 5197557 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 878990 |
End bp | 880609 |
Gene Length | 1620 bp |
Protein Length | 539 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640580338 |
Product | tetratricopeptide TPR_4 |
Protein accession | YP_001261299 |
Protein GI | 148553717 |
COG category | |
COG ID | |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.674308 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGGACCG GTCTTCATGG CGATGCCGAT GCGCGACAGG CGATCGTGAA GACCGACGGA GCGCCCGGCG AACGCCGCTA TCGCGCGTTC ATCAGCTATA GCCACAGCGA CGAGGCGGCC GCGCGGCGGC TGCACCGCTG GCTCGAATCC TATCGCATTC CCCGGCGGCT CGTCGGACAG GGCACGGCGC GGGGCGAGGT GCCCCGGCGG CTGGCGCCGA TCTTCCGCGA CCGGCTCGAA TTCCCGGCGG CCTCCAGCCT CAACGCGGCG ATCGAGGAAG CGCTCGCCAT GTCGGACGCG CTGCTGGTGC TCTGCTCGCC GGCCGCGCGC GCCTCGCTGT GGGTCAATGC CGAGATCAGG CTGTTCCGGC GGCTGCATCC CGATCGCCCG ATCATCGCCG CGCTGCTGAC CGGCGAACCC GCCGACGCCT TCCCCGAGGC GCTGCTGGAG CCCGATGCGG CGGGCGTCGC CGACGAACCG GTCGCCGCCG ATTTCCGCCG CAGCCATGAC GGCGCGAAGC TGGCGCGCCT GAAGATCGTC GCCGGCCTGA CCGGCCTCGC GCTCGACGAA CTGATCCAGC GTGAAGCACA AAGGCAGCTT CGACGTGTGA TCGCCGTCAC GGTCGCCTCG CTGGCTTTCG CCCTAATCAT GGCGATGCTG CTCATCTTCG CCATCCTCGC GCGAAGGGAG GCCGAACATC AGCGCCGGCA AGCGGAAGGC CTGATCGAAT TTATGCTCAC CGACCTCAGG ACCAGATTGC AGGGGGTAGG CAGGCTGGAG ATCCTCCAAT CGGTGAACGC ACGCGCCCTC GCTTATTATG GCGAGCAGTC GGACCTGAAC CGGCTGCCGG CGGAATCGCT CGAACGGCGG GCGCGAGTGC TCCACGCGAT GGGCGAGGAC GACCATAAGC GCGGCGACTA TGCCGCCGCC CTCGCCACCT TCCGCGAGGC GCACCGGGTG ACGGCGACGC TGCTCGCGGC GAAGCCCGGC GACCCCTTGC GCATCTTCGC CCATGCCCAG AGCGAGTTCT GGCTGGGCTA TGTCGACTTC GTGCGCTTCC GCTACGCGCG CGCGCTGCCG CGCTTCGTCG CCTATCGCGA CCTCGCCCGC CGGCTGGTCG CGATCAGCCC CGAAGACCTG AAATATCGCC GCGAGCTCGG CTATGCGGAG GGCAATCTCT GCACGATCGC GGTGGCGCGC AAGGGTCCGC CCGCCGATCT CGACGCCTGC GCCGCCGCGC TGGCGACGAT GGAGCATATC GCGCGGTCGT CGCCCGGCGA TCCCGGCATC CAGAGCGACC TCGCCAACCG CCACGCCTGG ATGGCCGACG CGCTGCGCCT GACCGGCCAC GACGAGGAGG CGATGGCGCA CCGCGACAGG CAGCGGGCGA TCATCGACCG GCTGCTCGCC GCCGATCCCA AGAATGCCAG CTATCGCCAG GACTGGATAT TGTCGCGCTA CTCGACCTCG GAACTGCTCC GCGCGCTCGG CAAGCCGGCC GAGGCGGACG CGATGATCGC CGAGTCCCGG CGGGTGATCG ACGGCCTGAT CGCCTCCGAT CCCGAGAATG AGGACTGGCG CGTCTGGCGC GAGAAGCTCA ATCAACCCGA TCCGCAATAG
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Protein sequence | MGTGLHGDAD ARQAIVKTDG APGERRYRAF ISYSHSDEAA ARRLHRWLES YRIPRRLVGQ GTARGEVPRR LAPIFRDRLE FPAASSLNAA IEEALAMSDA LLVLCSPAAR ASLWVNAEIR LFRRLHPDRP IIAALLTGEP ADAFPEALLE PDAAGVADEP VAADFRRSHD GAKLARLKIV AGLTGLALDE LIQREAQRQL RRVIAVTVAS LAFALIMAML LIFAILARRE AEHQRRQAEG LIEFMLTDLR TRLQGVGRLE ILQSVNARAL AYYGEQSDLN RLPAESLERR ARVLHAMGED DHKRGDYAAA LATFREAHRV TATLLAAKPG DPLRIFAHAQ SEFWLGYVDF VRFRYARALP RFVAYRDLAR RLVAISPEDL KYRRELGYAE GNLCTIAVAR KGPPADLDAC AAALATMEHI ARSSPGDPGI QSDLANRHAW MADALRLTGH DEEAMAHRDR QRAIIDRLLA ADPKNASYRQ DWILSRYSTS ELLRALGKPA EADAMIAESR RVIDGLIASD PENEDWRVWR EKLNQPDPQ
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