Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0522 |
Symbol | |
ID | 5200598 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 565939 |
End bp | 567819 |
Gene Length | 1881 bp |
Protein Length | 626 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640580063 |
Product | signal peptide peptidase SppA, 67K type |
Protein accession | YP_001261028 |
Protein GI | 148553446 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.200693 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCTGG TTCGGGGGCT CTGGAAACTG CTCGTCGGGA TCAAGGACGG GCTCGTCCTG ATCGCGATGC TGATCTTCTT CGGGACGCTG TTCCTCGCCT TGTCGATCAA GCCGAACAGT ACGCTGCCCT CGTCGGGCGC GCTGGTGATC GACCTCGACG GCACGCTGGT CGAGCAGCCC GCCGAGACCG ATCCGCTGAC GCTGCTGGCC GGCAATGGCG GGATCGCGCG CGAGACGCGG CTGCGCGACC TCGAACGGGC GCTGCAGGCC GCGGCGGAAT CGAACGGCGT CAAGGCGATC GTCCTCGACC TCGACAGCTT CGCCGGCGGC GAGCAGGCGA CGATCGCGGC GGCGGGCCGC GCGCTCGACA AGGCCCGCGC CGCGGGCAAG CCGATCCTCG CTTATGCGAC CGGCTATGGC GACGACGGCT ATCAGCTCGC CTCCCACGCC ACGGAGGTCT GGCTCAACCC GCTCGGCGGG GTGATCCTCA CCGGACCGGG CGGCTCCCGG CTCTACTACA AGGGGCTGAT GGACCGGCTC GGCATCACCG CGAAGATCTA CCGGGTCGGC GCGTTCAAGT CGGCGGTCGA ACCCTATATG CGATCCGACC AGTCGCCCGA GGCGCGCGAG GCCAACCAGG CGCTCGCCAA CGCGCTGTGG TCGACCTGGA CGGCCGAGGT CGGCAAGGCC CGGCCCAAGG CCAAGCTCGC CGCCTATGTC GAACGGCCGA CCGCGATCAT CGGCGAGGCG GGCGGGCGGA TGTCGCAGGC GGCGCTCAAC GCCGGCCTGG TCGACCGGCT CGGCGACCGC AACGCGTTCG ACTCGCGGGT CGCGGCGATC GCGGGCTCGG CCGGCGGCTC CAGCCTCAAC GGCTTCAAGG CGATCCCGCT CGATCGCTGG GCGAGCGCGC ATCCCGAGAA GTCGGGCGGG ACGCCGATCG GCGTGCTGAC CGTCGCGGGC GACATCGTCG ACGGCGACGC CCCGCCGGGC GCGGCCGGCG GCACCACCAT ATCGGACCTG CTGCTCGACG AGCTGGGCCG CAAGCGGACC AAGGCGCTGG TCGTGCGGGT CGATTCCCCC GGCGGATCGG TCACCGGCGC GGAGACGATC CGCTCGGCGA TCCTCCAGGC GAAGGGGCTC GGCCTTCCCG TCGTCGTGTC GATGGGCGGC CTTGCCGCGA GCGGCGGCTA CTGGATATCG ACCCCGGCCG ACCGGATCAT CGCCGATCCG GCGACGATCA CCGGCTCGAT CGGCGTGTTC GGCATCCTGC CGACCTTCCA GGGTTCGCTC GCCAAGCTCG GCCTGTCGGC GGACGGCGTG AAGACGACGC CGCTGTCGGG CGAGCCCGAC GTCTTCCGCG GCACCTCGCC GCAGTTCGAC GCGATGATGC AGGGCTCGAT CGAGGATGTG TACCGGCGCT TCACCGGGCT GGTCGCGCAA TCACGCAAGC TGCCGATCGA GCGCGTTCGC GAGATCGCCG AGGGCCGCGT CTGGGCCGGC GCCACCGCCC GCCAGATCGG GCTGGTCGAC GGCTTCGGAT CGGTCGACGA CGCGATCGCC GAGGCCGCGA AGCTCGCCAA GCTCGACCCC GCCAAGGTGC GTCCGCTCTA TATCGAGAAG CCGCTGAATC CGTGGAAGGA GATGATCCGC TCGCTGATCG ATCCCGACAA TGACAGCAGC GAGGCCGGCA GCCGCACCTT CTGGGGCGGC GTCGCCAACG GCCCGGACCA GGCGCTGGTC GTCGCGCTGG CCAATGCCCG GCGCGTGCTG GGCGGGCCGG CGATCCAGGT GCGCTGCCTC GAATGCGCTT CGGCCGCGAC GCCGCCGCGT CCGGCCGATA TCCGCGCCGC GCGCAGCCTG CTCGCATGGG CGGTCCGCTG A
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Protein sequence | MKLVRGLWKL LVGIKDGLVL IAMLIFFGTL FLALSIKPNS TLPSSGALVI DLDGTLVEQP AETDPLTLLA GNGGIARETR LRDLERALQA AAESNGVKAI VLDLDSFAGG EQATIAAAGR ALDKARAAGK PILAYATGYG DDGYQLASHA TEVWLNPLGG VILTGPGGSR LYYKGLMDRL GITAKIYRVG AFKSAVEPYM RSDQSPEARE ANQALANALW STWTAEVGKA RPKAKLAAYV ERPTAIIGEA GGRMSQAALN AGLVDRLGDR NAFDSRVAAI AGSAGGSSLN GFKAIPLDRW ASAHPEKSGG TPIGVLTVAG DIVDGDAPPG AAGGTTISDL LLDELGRKRT KALVVRVDSP GGSVTGAETI RSAILQAKGL GLPVVVSMGG LAASGGYWIS TPADRIIADP ATITGSIGVF GILPTFQGSL AKLGLSADGV KTTPLSGEPD VFRGTSPQFD AMMQGSIEDV YRRFTGLVAQ SRKLPIERVR EIAEGRVWAG ATARQIGLVD GFGSVDDAIA EAAKLAKLDP AKVRPLYIEK PLNPWKEMIR SLIDPDNDSS EAGSRTFWGG VANGPDQALV VALANARRVL GGPAIQVRCL ECASAATPPR PADIRAARSL LAWAVR
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