Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0289 |
Symbol | |
ID | 5197838 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 305532 |
End bp | 306761 |
Gene Length | 1230 bp |
Protein Length | 409 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640579829 |
Product | L-carnitine dehydratase/bile acid-inducible protein F |
Protein accession | YP_001260798 |
Protein GI | 148553216 |
COG category | [C] Energy production and conversion |
COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.158157 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.780487 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCCAGAC TACCCCTCGA GAATATCCGC GTCCTCGATC TCACCCGCGT GCTGGCGGGC CCGTTTGGAT CGCAAGTGCT CGCCGACATG GGCGCCGACG TGATCAAGAT CGAGCGGCCG GTGGTGGGCG ACGACGCCCG CATCTTCGGC GAGCCCTATC TGCGCGACAC CGAAGGCAAC CGCACCCGCG AGAACGCCTT CTACATGTCG GTGAACCGCA ACAAGCGGTC GGTGGCGCTC AACATCGCCT CCGCGCGCGG GCAGGCGCTG ATCCGCGAGC TGGTCCTGTC GTGCGACGTG GTGATGGAGA ATTACAAGGT CGGCGACCTC AAGCGCTACG GCCTCGACTA TGAGAGCCTG AAGGCGATCA ACCCGCGCAT CGTCTACTGC TCGGTCACCG GCTACGGCCA GACCGGGCCG CTCGCCGCCA AGCCCGGCTA TGACGCGGTG TTCCAGGGCG AATGCGGGCT GATGAGCGTC ACCGGCGTGC CCGACGGCAA GCCCGGCGCC GGGCCGATGA AGGTCGGCCC CAGCATCATC GACCTGTTCA CCGGCCTCAA CGTCGCCAAC GCGATCCTCG CCGCGCTCTA TCATCGCGAC GCCGCCGGCG GCGAAGGCCA GTATATCGAC GTCGCCCTGC TCGACTGCGG CATCTCCGCC CTGTCGCACT ATGCCCAGAT CCACCTCACC TCGGGCGAGG TCCCGGTGCG GCGCGGCACC CAGGGCAATG GCGGCATGCC GACCAGCAAA TTCGCGTGCA GCGACGGGGC GATCATGATC ACTTCGGGCA ACGACAAGCA ATATGTCGCG CTGTGCGACG CGGTCGGCCA TCCCGAGCTC GCCACCCATC CGCGCTTCCA CACCAATGTG CTGCGCGTCC AGCATCGCGA CGAGATCACC GAGGTGTTCG ACGCGATCTT CGCCACCGAC ACGGTCGCCC ACTGGCTGGA GAAGCTGGGC GCGGCCGGCA TCCCCAGCGG CCCGATCAAC GACCTGGAGC AGGTGTTCGA CTATCCCCAG GCGCGGCACC GCGGCATGCG CGTCCGCGCG CCGCACCCGC TCAAGCCCGA TCTCGACCTG ATCCGCAGCC CGCTCAACTT CTCCGAGACG CCGATCACCG ACTATCGCGC CCCGCCGATG CTGGGCGAGC ATACCCGCGC CGTGCTGGCC GGGGAGCTGG GCCTGAGCGA GGCCGAGATC GACGCGCTCG GGGACGAAGG GGTGATTTGA
|
Protein sequence | MARLPLENIR VLDLTRVLAG PFGSQVLADM GADVIKIERP VVGDDARIFG EPYLRDTEGN RTRENAFYMS VNRNKRSVAL NIASARGQAL IRELVLSCDV VMENYKVGDL KRYGLDYESL KAINPRIVYC SVTGYGQTGP LAAKPGYDAV FQGECGLMSV TGVPDGKPGA GPMKVGPSII DLFTGLNVAN AILAALYHRD AAGGEGQYID VALLDCGISA LSHYAQIHLT SGEVPVRRGT QGNGGMPTSK FACSDGAIMI TSGNDKQYVA LCDAVGHPEL ATHPRFHTNV LRVQHRDEIT EVFDAIFATD TVAHWLEKLG AAGIPSGPIN DLEQVFDYPQ ARHRGMRVRA PHPLKPDLDL IRSPLNFSET PITDYRAPPM LGEHTRAVLA GELGLSEAEI DALGDEGVI
|
| |