Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0265 |
Symbol | |
ID | 5196371 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 274215 |
End bp | 278969 |
Gene Length | 4755 bp |
Protein Length | 1584 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640579805 |
Product | glutamate synthase (NADH) large subunit |
Protein accession | YP_001260774 |
Protein GI | 148553192 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0069] Glutamate synthase domain 2 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.568336 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.146722 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCAAGGCC ATGTGATTTT GGAGGGTTCA CTCGGGATAT CATCCCTGTA TAGGCACGGC CGAAACGCCC GCGCGATCGG GCCCAAGGGA GCAGCATGCC GGATGGCCTA TCCGCACAAT CAGGGTCTGT ACGATAGCCG CAACGAGCAT GACGCCTGCG GCGTCGGCTT CATCGCCAAC ATCCGTGGCG AGAAATCCAA CGCGATCGTC CAGCGCGGCC TCGAGATCCT GCTCAAGATC GACCATCGCG GCGCGGTCGG CGCCGATCCG CTGCTCGGCG ACGGCGCCGG CATCCTGATC CAGATTCCCG ACGCGCTGCT GCGCGCCTGG GCCGCCGGCA TCGGCGTCGC CCTGCCCGCC CCCGGCGACT ATGGCGTCGC CATGTGCTTC CTGCCGCGCG ACGCCGCCGC GCGCGACCTG GCGGTCGGCA ATTTCGAGAA GTTCATCGCC AAGGAAGGCC AGCATCTGAT CGGCTGGCGC GACGTTCCGG TCGACACCGC CGGCCTCGGC CAGGCGGTGC TCGACGAGAT GCCGGTGATC CGCCAGGCGA TCATCGGCCG CGGCGGCGAC TGCGCCGACC AGGATGCGTT CGAGCGCAAG CTGCTCGTCA TCCGCAAGCA GACCCAGAAC CCGCTCGAAG CCCTCGCCCG CAAGCATGAC CTGCCGGGCC TGACCGATCT CTACATGCCG TCCTTCTCGA CCCGCACCGT GGTCTACAAG GGGCTGCTGC TCGCGGGCCA GGTCGGCAGC TTCTACAAGG ACCTGTCCGA TCCGCTGACC ACCTCGGCGA TCGCGCTGGT CCACCAGCGC TTCTCGACCA ACACCTTCCC GAGCTGGAAG CTGGCGCACC CCTACCGCTT CATCGCCCAC AACGGCGAGA TCAACACGGT GCGCGGCAAC GTCAACTGGA TGAACGCGCG CCGCCGGACG ATGGAGTCCG ACCTGATCGG CGCCGATCTC GACAAGATCT GGCCGATCAT CCCGCACGGC CAGTCGGACA CCGCCTGCCT CGACAATGCG TTGGAGCTGC TCGTCGCCGG CGGCTATTCG CTGGCGCATG CGGTGATGAT GCTGATCCCG GAAGCCTGGG CCGGCAACCC GCTGATGGAC CCGGCGCGCA AGGCCTTCTA CGAATATCAC GCCGCGCTGA TGGAGCCGTG GGACGGCCCC GCCGCCGTCG CCTTCACCGA CGGCCGCCAG ATCGGCGCGA CGCTCGACCG CAACGGCCTG CGCCCCGCCC GCTTCCTCGT CACCGACGAC GACCATGTGA TCATGGCGTC GGAATCGGGC GTGCTGCCGG TTCCCGAGGA GAAGATCGTC CGCAAGTGGC GCCTCCAGCC CGGCAAGATG CTGCTGATCG ACATGGAGCA GGGCCGGATC ATCGAGGACG AGGAGATCAA GGCCAGCCTC GCCGAGGCCG AGCCCTACGC CAAGTGGCTC GAGGCCAACC AGTACAAGCT CAAGGACCTC GAGGTGCTGG CGACCGACGA CGGGACCGCC ACCCCCGCTT TGCCCAACGA CCCGCAGGCG CTGCTCGATC GCCAGCAGGC GTTCGGCTAT TCGCAGGAGG ACATCGCCCG ATTCCTCGAA CCGATGGCCC GCGCCGGCGA GGACCCGATC GGATCGATGG GCACCGACAC GCCGATCGCC GTGCTCTCGG CCCGGCCGCG CCTGCTCTAC GACTATTTCA AGCAGAATTT CGCGCAGGTC ACCAACCCGC CGATCGACCC GATCCGCGAG GAGTTGGTGA TGTCGCTGGT GTCGATGATC GGCCCGCGCC CGAACCTGCT CGGCCGCGAG GCCGGCACCC ACAAGCGGCT GGAGGTCGAC CAGCCGATCC TCACCAACCG CGACCTGACC CGCATCCGTT CGGCCGAGGA GCAGCTCGAC GGCGCCTTCC GCACCGAGAC GATCGACATC ACCTGGGATG CCGCGACCGG GGCCGACGGC CTCGCCATGG CGCTCAAGGA GATGTGCTGG GCGGCGACCG AGGCGGTGCT CGCCGACAAG AACATCCTGA TCCTGTCCGA CCGCGCCCAG AGCGCCGACC GGATCGCGAT GCCCGCGCTG CTCGCCACCG CCGCCGTCCA CCATCATCTC GTCAAGCAGG GGCTGCGCAT GCAGACCGGC CTCGTCGTCG AGACCGGCGA GGCGCGCGAG GTCCATCATT TCTGCGTGCT CGCGGGCTAT GGCGCGGAGG CGATCAACCC CTGGCTCGCC TTCGACACGC TGGAGGAGAT CCGCGTCCGC CAGGAGCTGC CGCTGTCGCC CAACGGGGTG CAGAAGAACT ACATCAAGGC GATCGGCAAG GGCATCCTCA AGGTCATGTC CAAGATGGGC ATCTCGACCT ATCAGAGCTA TTGCGGCGCG CAGATCTTCG ACGCGATCGG CCTGTCCTCG GCCTTCGTCG ACAAATATTT CACCGGCACC GCGACGACGA TCGAGGGCAT CGGCCTGGCC GAGCTCGCCG AGGAGACCGT CCGCCGCCAC GCCGCCGCCT ATGGCGACAA CCCGATCTAC CGCAACATGC TCGATGTCGG CGGCGTCTAT GGCTACCGCA TCCGCGGCGA GGAGCATGCC TGGACGCCCG AGAGCGTCTC GGCGCTCCAG CATGCGGTGC GCGGCAACAG CAAGGAGCGC TACGAGGCGT TCGCCCGCTC GATCAACGAG CAGAACGCCC GGCTGCTGAC GATTCGTGGC CTGATGACGC TGAAGAAGGC CGACCGGCCG CTGTCGATCG ACGAGGTCGA ACCGGCCTCC GAGATCGTCA GGCGCTTCGC CACCGGGGCG ATGAGCTTCG GCTCGATCTC GCGCGAGGCG CACACCACGC TGGCGATGGC GATGAACCGC ATCGGCGGCC GTTCGAACAC CGGCGAGGGC GGCGAGGAAG CCGATCGCTT CAAGCCGCTG CCCAACGGCG ACTCGATGCG CTCGGCGATC AAGCAGGTCG CCTCGGGCCG GTTCGGCGTC ACCGCCGAAT ATCTGGTCAA CGCCGACGAC ATCCAGATCA AGATGGCGCA GGGCGCGAAG CCCGGCGAAG GCGGCCAGCT GCCCGGCGAC AAGGTCGACA AGAACATCGC CCGCGTCCGC CATTCGACGC CCGGCGTCGG CCTGATCTCG CCGCCGCCGC ACCACGACAT CTATTCGATC GAGGACCTGG CGCAGCTCAT CCACGACCTC AAGAACGTCA ACACCGGCGC CCGCATCTCG GTGAAGCTGG TGTCGGAGGT CGGCGTCGGC ACGGTCGCGG CCGGCGTCTC CAAGGCGCGC GCCGACCATG TCACCATCTC CGGCTATGAG GGCGGCACCG GCGCCTCCCC GCTCACCTCG CTCACCCATG CCGGCAGCCC GTGGGAGATC GGCCTCGCCG AGACCCAGCA GACGCTGCTG CTCAACGGCC TCAGGAGCCG CATCGCGGTG CAGGTCGACG GCGGGCTGCG CACCGGCCGC GACGTCGCGA TCGGCGCGCT GCTGGGGGCC GACGAGTTCG GCTTCGCCAC CGCGCCGCTG ATCGCCGCCG GCTGCATCAT GATGCGCAAA TGCCATCTCA ACACCTGCCC GGTCGGCGTC GCCACCCAGG ACCCGGTGCT GCGCGCGCGC TTCACCGGCC AGCCCGAGCA TGTGATCAAC TATTTCTTCT TCGTCGCGGA GGAGCTGCGC CAGATCATGG CGGAGATGGG CTTCCGCACG ATAGAGGAGA TGGTCGGCCG GGTCGACCGG ATCGACATGC GTCCGGCGCT CGACCATTGG AAGGCGCACG GCGTCGACCT CGGCCGCCTG CTCCACCAGG CGCCGCCGGC GATGGGCAAC ACGCTCCACC ACTCGCAGTT CCAGGACCAC GGCCTCGACG CCGCGCTCGA CAACCACCTG ATCGCCGCCG CGATGCCGGC GCTCGAACAG GGCGAGCCGG TGGTGATCGA GCGGCCCGTC GCCAACGTCA ACCGCACCGT CGGCGCGATG CTGTCGGGCG AGGTTGCGAA GCGCCACGGC CATGAGGGCC TGCCGGAGAA CAGCATCACC GTCCGCCTGA CCGGCGTCGC GGGGCAGAGC TTCGGCGCCT TCCTGGCGCA CGGCGTCACC CTGGAGCTGA CCGGCGACGG CAACGACTAT GTCGGCAAGG GCCTGTCGGG CGGCCGCGTG ATCGTCCGCC AGCCGGCCGG GGTCGACCGC GATCCGCTGG AGAACATCAT CGTCGGCAAC ACCGTGCTCT ACGGCGCGAT CGCGGGCGAG GCCTATTTCC AGGGCGTCGC GGGCGAGCGC TTCGCGGTCC GCAACTCGGG CGCGATCGCG GTGGTCGAGG GCACCGGCGA CCATGGCTGC GAATATATGA CCGGCGGCGT GGTCGCCGTG CTCGGCCGCA CCGGGCGCAA CTTCGCGGCG GGCATGTCGG GCGGCATCGC CTATGTCCAC GACGCCGACG GGCTGTTCCG CCAGCGCTGC AACCTGGCGA TGGTCGACGT CGAGCCGATC GATCCCGCCG CCGACGCCGA CGTCGAGGAG GGCCGCCCGC ACCAGCGCGC CGCCAGCGTC CACGACTATG GCATGGGCGA CATGCTCCGC CATGACGCGG CGCGGCTGCG CATCCTGCTC GAACGGCATC ATCTCCACAC CGGCAGCGAT CAGGCCGCCG CGTTGCTGGA GGATTGGGAC ACCACGCTGT CGCGCTTCGT GAAGGTCATG CCGCGCGACT ATCGGCGGGC GTTGCAGCAG CTTGAGGCCG AGCGCCTCGC CGCCGCCAAC GTCGCCGCCG AATGA
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Protein sequence | MQGHVILEGS LGISSLYRHG RNARAIGPKG AACRMAYPHN QGLYDSRNEH DACGVGFIAN IRGEKSNAIV QRGLEILLKI DHRGAVGADP LLGDGAGILI QIPDALLRAW AAGIGVALPA PGDYGVAMCF LPRDAAARDL AVGNFEKFIA KEGQHLIGWR DVPVDTAGLG QAVLDEMPVI RQAIIGRGGD CADQDAFERK LLVIRKQTQN PLEALARKHD LPGLTDLYMP SFSTRTVVYK GLLLAGQVGS FYKDLSDPLT TSAIALVHQR FSTNTFPSWK LAHPYRFIAH NGEINTVRGN VNWMNARRRT MESDLIGADL DKIWPIIPHG QSDTACLDNA LELLVAGGYS LAHAVMMLIP EAWAGNPLMD PARKAFYEYH AALMEPWDGP AAVAFTDGRQ IGATLDRNGL RPARFLVTDD DHVIMASESG VLPVPEEKIV RKWRLQPGKM LLIDMEQGRI IEDEEIKASL AEAEPYAKWL EANQYKLKDL EVLATDDGTA TPALPNDPQA LLDRQQAFGY SQEDIARFLE PMARAGEDPI GSMGTDTPIA VLSARPRLLY DYFKQNFAQV TNPPIDPIRE ELVMSLVSMI GPRPNLLGRE AGTHKRLEVD QPILTNRDLT RIRSAEEQLD GAFRTETIDI TWDAATGADG LAMALKEMCW AATEAVLADK NILILSDRAQ SADRIAMPAL LATAAVHHHL VKQGLRMQTG LVVETGEARE VHHFCVLAGY GAEAINPWLA FDTLEEIRVR QELPLSPNGV QKNYIKAIGK GILKVMSKMG ISTYQSYCGA QIFDAIGLSS AFVDKYFTGT ATTIEGIGLA ELAEETVRRH AAAYGDNPIY RNMLDVGGVY GYRIRGEEHA WTPESVSALQ HAVRGNSKER YEAFARSINE QNARLLTIRG LMTLKKADRP LSIDEVEPAS EIVRRFATGA MSFGSISREA HTTLAMAMNR IGGRSNTGEG GEEADRFKPL PNGDSMRSAI KQVASGRFGV TAEYLVNADD IQIKMAQGAK PGEGGQLPGD KVDKNIARVR HSTPGVGLIS PPPHHDIYSI EDLAQLIHDL KNVNTGARIS VKLVSEVGVG TVAAGVSKAR ADHVTISGYE GGTGASPLTS LTHAGSPWEI GLAETQQTLL LNGLRSRIAV QVDGGLRTGR DVAIGALLGA DEFGFATAPL IAAGCIMMRK CHLNTCPVGV ATQDPVLRAR FTGQPEHVIN YFFFVAEELR QIMAEMGFRT IEEMVGRVDR IDMRPALDHW KAHGVDLGRL LHQAPPAMGN TLHHSQFQDH GLDAALDNHL IAAAMPALEQ GEPVVIERPV ANVNRTVGAM LSGEVAKRHG HEGLPENSIT VRLTGVAGQS FGAFLAHGVT LELTGDGNDY VGKGLSGGRV IVRQPAGVDR DPLENIIVGN TVLYGAIAGE AYFQGVAGER FAVRNSGAIA VVEGTGDHGC EYMTGGVVAV LGRTGRNFAA GMSGGIAYVH DADGLFRQRC NLAMVDVEPI DPAADADVEE GRPHQRAASV HDYGMGDMLR HDAARLRILL ERHHLHTGSD QAAALLEDWD TTLSRFVKVM PRDYRRALQQ LEAERLAAAN VAAE
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