Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0215 |
Symbol | |
ID | 5196416 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 214097 |
End bp | 214879 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640579755 |
Product | flagellar biosynthetic protein FliR |
Protein accession | YP_001260724 |
Protein GI | 148553142 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.598232 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATACCCC AGGGCCTGGC GGGGATCGAA ACCCAGCTCT GGCTTTGGAT GATCGCGATG ATCCGGCCGG GCGCGGCGTT CATCGCGGCG CCGGTGTTCG GCGCGCCGCA GGTGCCGATG CAGCTTCGCG CCGTCGTGGC GCTGGCGATC GGCATCCCCG CGCTGGCCAA CACGCCCTTC GTGATGCCGG TCGGCGGGAT CGTGACGATC GAGGGCTTCC TGCTGGTCGC GGGGGAGATA CTCGCCGGGC TCGCGCTCGG CTTCGCGGTG CAGATCGGCT TCTCCGCCGC GCTGGTCGCG GGCGAGGTGA TCGGCAACGC GATGGGGCTC GGCTTCGCGG GGATGATGGA CCCGGCGACC GGATCGCCCT CCCCCGCCGT CAGCCAATAT CTCTCGCTGC TCGCGACCTT CCTGTTCCTG GCGACCGGCG GCCATCTCCA GCTCGCCGCG ATCATCGTCG AGAGCTATCG CGCGCTGCCG CCGGGCGAGG CCTGGCTCGG CGCGCGCAGC ATCCAGGGGC TGGCGCTGTT CGGCGGCGAC CTGTTCGCGG CCGGCCTCGC CATCGCCCTG CCGGTCGGCT TCGCGCTGAT CCTCGTCCAG CTCGTCATGG CGATGCTGGC GCGGTCGGCG CCGCAGATGA ACATCTTCTC GGTCGGCCTG CCCGCCACGC TGATGGCCGG CCTCGTCCTG CTGGCGATCG CCGCCCCGGT GATGGCCGAC GGCATCACCG CCGCGATCCA GCGCGGCCTC GCCGAGGCGC GGCTGCTCGC GCTCGGGAGA TAG
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Protein sequence | MIPQGLAGIE TQLWLWMIAM IRPGAAFIAA PVFGAPQVPM QLRAVVALAI GIPALANTPF VMPVGGIVTI EGFLLVAGEI LAGLALGFAV QIGFSAALVA GEVIGNAMGL GFAGMMDPAT GSPSPAVSQY LSLLATFLFL ATGGHLQLAA IIVESYRALP PGEAWLGARS IQGLALFGGD LFAAGLAIAL PVGFALILVQ LVMAMLARSA PQMNIFSVGL PATLMAGLVL LAIAAPVMAD GITAAIQRGL AEARLLALGR
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