Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_38430 |
Symbol | |
ID | 8389164 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 4159646 |
End bp | 4161304 |
Gene Length | 1659 bp |
Protein Length | 552 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644977854 |
Product | PAS domain S-box |
Protein accession | YP_003135614 |
Protein GI | 257057782 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4585] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCGAGTG TGCTCGACAC GGCGTTCCTC ACATATGTTG AGAGTGGCGT CACGCGCGAA AGTCCCGCGC ACGGACGCCA GGTGAGCGAG GCGGGAGGTG TGACCATGAG CCATACCGCT GCCCGGAGCG AGACCACGTT CGACACCGCG GTGTTGCGCG AGCTGGTGGA GTTGTCCGGT GACGGACTCG CAGTGCTCGA CGACCGCGGT CATTTCGTGA CGGTCAATCC GGCAGGTGTG CGCATCCTCG GGGTTCCGGA AGACCGACTG CTCGGCACTC GCTCCCCCTT CGACGTCTCG CGGCGGAACG TGACTTCGGG CTCGGACGAG ATGGAGCGCG CCGAGTGGAC GGCGCCCGAT GGACGCAGGC GGTACCTGGA GTACCGCGTG TCCGAGCTGG CTAACGGGGG TGTGGCGGTC TGGTTCACCG ACATCACCGA GATCCTGCTT CAACAGGAGC GGCTCACGGC CATCACACGC GCGGCGTCGA GCGTGGCCGA TTCGGGGTCG TTGCGCGCGA CGCTCGATGC GATGGCACGG GAAGTGTGCA CCACCACCGC CATCTCCGCG GCCCAGATCC TCGCCGTCGA CGACCCGCGC GACGAACTGC GACTGCTCGG TATGGCGGGA TTCGGCGAGA CGACCGACTT CGTGGAGCGG CTCGCCGAGT GCAGGCGGCG CGGCGCGGAC ATCCGCTTTT TGGAAGTGCT CGAACACGGT GAACCGGTGG TCGTGCTCCA CCGCAAGCCG GTCATCATGG CGGACCCCGC GTGGGAACCA CTGCACGTGA TCATGGACTG GCCCGACTGG GACAGCTTCG TGTCGATGCC GCTCGTGGTG CGAGGACGCA CGGTCGGGAT CATCAACGCC TACTACGCGC CGGGCGAGGA CCCGGGGCCG AGCTCGCTGA CGTTCCTCTC CGCGATGGCC GACCACGCCG CGGTCGCCAT CGAGACGGCG GCTTTGCTCA CCCGTACCCG GTCGCGCGCC CAGCTCGACG AACGGCGCAA ACTCGCCCGG GACCTGCACG ATTCCGTGGT GCAGCACCTG TTCTCGATGG GGATGCAGGC CAAGGCGTTG CGGGCCCAAC TGGAACGCCC GGACGCCGAT CTGAGCCAAC TGCGCGGTGG GGCACAGGAA TTGGCGGAAC TGTCCCAGAA CGCGCTCGCC GATCTGCGTG GCCTCGTGTT CGAGCTACGT CCGATGGAGT TGGCCGAACG CGGCCTCGTG GACGCCGTGC GGTCGCATGC CGCGAGCCTG CAGGCGCGCA CGGGACTGAC GATCGACGTG CGTGCCCCCG TGGGCGATGC CCTCGACCTG GATCTCGAAG TGGCCGAGGA CGTCTACCGC ATCGTGCAGG AGGCCCTGCA CAACGTGATC AAGCACGCCA ACGCGACCAA GGCCGAGGTC ACGATCACGA CCCCGGAGCA CGATCATCGG GGGTTGCTGG TGAAGATATC CGACAACGGA CGTGGCAAAG GGCAGAAGCC ACGTGACCGT ACCGCCTTCC GACGAGAGAG TCTCGGCCTT CAGTCCATGC GGGAACGTGC CGAACGATGG CGGGGACGGT TGGTCGCGGG ACCGCGTCCC TCGGGTGGTT GGACGGTGGC GGTGAGCCTG CCCGCGCAGG GCTCCTACGC GATGAAGGAG GCGTCCTGA
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Protein sequence | MASVLDTAFL TYVESGVTRE SPAHGRQVSE AGGVTMSHTA ARSETTFDTA VLRELVELSG DGLAVLDDRG HFVTVNPAGV RILGVPEDRL LGTRSPFDVS RRNVTSGSDE MERAEWTAPD GRRRYLEYRV SELANGGVAV WFTDITEILL QQERLTAITR AASSVADSGS LRATLDAMAR EVCTTTAISA AQILAVDDPR DELRLLGMAG FGETTDFVER LAECRRRGAD IRFLEVLEHG EPVVVLHRKP VIMADPAWEP LHVIMDWPDW DSFVSMPLVV RGRTVGIINA YYAPGEDPGP SSLTFLSAMA DHAAVAIETA ALLTRTRSRA QLDERRKLAR DLHDSVVQHL FSMGMQAKAL RAQLERPDAD LSQLRGGAQE LAELSQNALA DLRGLVFELR PMELAERGLV DAVRSHAASL QARTGLTIDV RAPVGDALDL DLEVAEDVYR IVQEALHNVI KHANATKAEV TITTPEHDHR GLLVKISDNG RGKGQKPRDR TAFRRESLGL QSMRERAERW RGRLVAGPRP SGGWTVAVSL PAQGSYAMKE AS
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