| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_36410 |
|---|
| Symbol | |
|---|
| ID | 8388962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3961896 |
|---|
| End bp | 3963680 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644977655 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_003135421 |
|---|
| Protein GI | 257057589 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00970] 2-isopropylmalate synthase, yeast type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.98983 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGT CCGAACCCAC CGCGAGGCCG GTAAGCCGCA TCCGCACCCC GTCCCGCCCC
GCCCCCGCCG ACCAGCCGTC CTGGAACCTC CAGCGTGGCA GTTCCATGCC GTTCCACCGG
TACCGTCCCT GGTACCGCCT GGTCGAGGAC ATCTCGCTGC CCGATCGCAC CTGGCCGGAC
AAGCGCATCG AACGAGCCCC GCTGTGGTGC GCGGTCGACC TGCGGGACGG CAACCAGGCA
CTGATCGACC CGATGTCGCC CGCGCGCAAG CGCAAGTTCT TCGACCTGTT GGTCCGCATG
GGCTTCAAGG AGATCGAGGT CGGTTTCCCC GCCGCCAGCC AGGCCGACTT CGACTTCGTC
CGCGAGATCA TCGAGGACAA CGCCATCCCC GACGACGTCC GCATCCAGGT ACTGGTGCAG
TGCCGTCCGG AACTGATCGA GCGCACCTTC GAAGCGTTGG AGGGCGCGCC GCGGGCCATC
GTGCACATCT ACAACTCGAC CTCGATCCTG CAGCGGCGCG TGGTGTTCCG GGAGGAACGC
GAGGGCATCA AGAAGATCGC CACGCAGGGC GCCGAACTCG TCCAGGAGTA CGCGGCGAAA
TACCCCGAGA CGGACTTCCG CTTCCAGTAC TCCCCCGAGT CGTTCACCGG GACCGAACTG
TCGTACGCGG CCGAGGTGTG CAACGCGGTC ACCGAGATCT GGCAGCCCAC GCCGGAGAAC
CCGGTGATCG TGAACCTGCC CGCGACCGTC GAGATGGCCA CCCCCAACGT GTACGCCGAC
GCGGTCGAGT GGATGAACCG CAACCTGGAG CGGCGGGACT CGCTGATCCT GTCGCTGCAC
CCGCACAACG ACCGCGGTAC CGGCATCGCC GCCGCGGAGC TGGGCTACCA GGCGGGCGCC
GACCGGATCG AGGGTTGCCT GTTCGGCAAC GGGGAACGCA CCGGAAACGT CGACCTGGTC
GCGCTGGGAC TGAACCTGTT CAGCCAGGGC ATCGACCCGC AGCTGGACTT CTCGGACCTC
GACGAGATCA AGCGCACGGT CGAGTACTGC AACCAGCTGA AGGTTCACGA ACGCAGCCCG
TGGGCCGGGG ACCTGGTGTT CACCGCCTTC TCCGGAAGCC ACCAGGACGC GATCAACAAG
GGCTTCGACG CGCTGCGCGA CGCCGCGGAC AAGGCCGGCG TCCCGGTGGA CGAGTACCCG
TGGGAGGTGC CGTACCTGCC GATCGACCCG AAGGACGTCG GCCGCACCTA CGAGGCCGTC
ATCCGCGTGA ACTCGCAGTC CGGCAAGGGC GGCATCGCCT ACATCATGAA GACCGAGCAC
CAGCTGGACC TGCCGCGCAG GCTGCAGATC GAGTTCTCGA AGATCATCCA GCGGCACACC
GACACCAAGG GCGGCGAGGT GGACCCGCAG ACCATGTGGC AGGCGTTCGC CGCCGAGTAC
CTCGAGCCGA AGACGCCGCT GGAGCTGGTG AGGAAGCATG TGCGGGCCAA CGGCGACTAC
GAACTGACCG CGACGATCCG CCTGGACGGC GAGGGGCAGG AGATCACCGG CCGCGGCAAC
GGACCGATCG CGGCGTTCTT CGACGCGCTC GCCACCGTCG GGTTCGACGT GCGCCTGTTG
GACTACAGCG AACACACGCT CCGTCCCGGC GACGACTCGA AGGCCGCCTC GTACATCGAA
TGCGCCATCG ACGACAAGGT GTACTGGGGT GTCGGCATCG ACTCATCGAT CATCACGGCC
TCCCTGTTGG CCGTCGTCTC GGCGATCAAC CGCGCCCACC GGTGA
|
|---|
| Protein sequence | MSTSEPTARP VSRIRTPSRP APADQPSWNL QRGSSMPFHR YRPWYRLVED ISLPDRTWPD
KRIERAPLWC AVDLRDGNQA LIDPMSPARK RKFFDLLVRM GFKEIEVGFP AASQADFDFV
REIIEDNAIP DDVRIQVLVQ CRPELIERTF EALEGAPRAI VHIYNSTSIL QRRVVFREER
EGIKKIATQG AELVQEYAAK YPETDFRFQY SPESFTGTEL SYAAEVCNAV TEIWQPTPEN
PVIVNLPATV EMATPNVYAD AVEWMNRNLE RRDSLILSLH PHNDRGTGIA AAELGYQAGA
DRIEGCLFGN GERTGNVDLV ALGLNLFSQG IDPQLDFSDL DEIKRTVEYC NQLKVHERSP
WAGDLVFTAF SGSHQDAINK GFDALRDAAD KAGVPVDEYP WEVPYLPIDP KDVGRTYEAV
IRVNSQSGKG GIAYIMKTEH QLDLPRRLQI EFSKIIQRHT DTKGGEVDPQ TMWQAFAAEY
LEPKTPLELV RKHVRANGDY ELTATIRLDG EGQEITGRGN GPIAAFFDAL ATVGFDVRLL
DYSEHTLRPG DDSKAASYIE CAIDDKVYWG VGIDSSIITA SLLAVVSAIN RAHR
|
|---|
| |