Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_34080 |
Symbol | |
ID | 8388732 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 3710609 |
End bp | 3712267 |
Gene Length | 1659 bp |
Protein Length | 552 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644977430 |
Product | AMP-binding domain protein |
Protein accession | YP_003135199 |
Protein GI | 257057367 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.448325 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAGCACG CGTCCACGCT TCCGAGTTAC ACCTCCGGCA CGTCGACGGT GCCACTGCTC GGAGACACCA TCGGTGACAA CCTCGATCGA ACGGCACGGA CCTTCGCCGA CCGGGACGCC CTCGTCGACT ACGCGAGCGG TCGCCGCTGG AACTATCGGG AGTTCGTCGC CGACGTCGAC GCGTTGGCCC TCGGTCTCCT GTACAGAGGT GTCACGAAAG GCGACCGCGT GGGCATCTGG GCGCCGAACT GCCCGCAATG GACTCTGACC CAGTACGCGA CGGCCAAGAT CGGCGCGATC CTGGTCAACA TCAACCCCGC GTATCGGGAG CACGAGCTGG AGTACGTCCT CAACCAGGCC GGGATCTCCA CGCTGATCGC CGCGAGCGAG TTCAAGACCT CCGACTACGC GGGCATGATC CACAAGGTGC GTCCCCGGTG CCCGTCATTG ACCGATGTGG TGTTCCTCGA CGGAGACCAC TGGGACGACC TGCTGGATAC GGGGCGCAAG GCCGATCCGG AGAGGTTGGC GCGCGCCCAG GCGGCGTTGA GCGCCGACGA CCCCATCAAC ATCCAGTACA CGTCCGGCAC GACCGGATTC CCCAAGGGCG CGACGCTGTC GCACCACAAC ATCCTCAACA ACGGCTTCTT CGTCGGCGAA CTGTGCCGTT ACACCGAGGT CGACCGCATC TGCCTGCCGG TGCCCTTCTA CCACTGTTTC GGGATGGTCA TGGGGAACCT CGCCGCCACC ACCCACGGGG CGTGCATGGT GATCCCCGCG CCCTCGTTCG ATCCCGCGAA GACCCTCGCC GCCGTGCAGG CCGAACGCTG CACCTCGTTG TACGGTGTGC CGACGATGTT CATCGCCGAG CTCGCCGAAC CGGACTTCGA CTCCTACGAC CTGTCCAGCC TGCGCACCGG CATCATGGCG GGTTCACCGT GCCCGGTGGA GGTGATGAAG CAGGTCATCG AGCGCATGGG CATGACCGAG GTGTCCATCT GCTACGGCAT GACCGAAACC TCGCCCGTGT CGATGCAGAC CAGGGTCGAC GACTCCATCG AGCGGCGGGT GTCCACCGTC GGACGGGTCG GACCGCACCT CGAGGCCAAG ATCATCGATC CGGAGACCGG GTTGACCGTC CCCCGCGGCA CCCACGGTGA GCTGTGCACA CGCGGCTACT CGGTGATGCT CGGGTATTGG GAGCAGCCGG ACAAGACCGC CGAGGTCATC GACGAGGCGC GCTGGATGCA CACCGGCGAT CTCGCCGTGA TGGACGAGGA CGGCTACGTC AACATCACCG GACGCCTCAA GGACATGGTG ATCCGGGACG GGGAGAACAT CTACCCGCGG GAGATCGAGG AGTTCCTCTA CACGCATCCG GACATCCTCG ACGCGCAGGT GATCGGTGTG CCCGACGAAC GCTACGGCGA GGAACTCATG GCCTGGGTCC GGATGCGGGA GGGCGCCGAA CCGCTGACGG CCGAAAGTCT GCGGGAGTTT TGCACCGGCA AACTCGCCCA CTACAAGATC CCCCGCTACG TGCATGTGGT GGACGAGTTC CCGATGACCG TCACCGGCAA GGTCCGCAAG GTGGAGATGC GCAAGCGGGC GGTGGAGTTG CTCGGCCTCG AAGCCGTCGC CCGTACCCGA CACGCGTGA
|
Protein sequence | MQHASTLPSY TSGTSTVPLL GDTIGDNLDR TARTFADRDA LVDYASGRRW NYREFVADVD ALALGLLYRG VTKGDRVGIW APNCPQWTLT QYATAKIGAI LVNINPAYRE HELEYVLNQA GISTLIAASE FKTSDYAGMI HKVRPRCPSL TDVVFLDGDH WDDLLDTGRK ADPERLARAQ AALSADDPIN IQYTSGTTGF PKGATLSHHN ILNNGFFVGE LCRYTEVDRI CLPVPFYHCF GMVMGNLAAT THGACMVIPA PSFDPAKTLA AVQAERCTSL YGVPTMFIAE LAEPDFDSYD LSSLRTGIMA GSPCPVEVMK QVIERMGMTE VSICYGMTET SPVSMQTRVD DSIERRVSTV GRVGPHLEAK IIDPETGLTV PRGTHGELCT RGYSVMLGYW EQPDKTAEVI DEARWMHTGD LAVMDEDGYV NITGRLKDMV IRDGENIYPR EIEEFLYTHP DILDAQVIGV PDERYGEELM AWVRMREGAE PLTAESLREF CTGKLAHYKI PRYVHVVDEF PMTVTGKVRK VEMRKRAVEL LGLEAVARTR HA
|
| |