Gene Svir_33010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_33010 
Symbol 
ID8388625 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp3581885 
End bp3582556 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content67% 
IMG OID644977325 
Productresponse regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein 
Protein accessionYP_003135094 
Protein GI257057262 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.163463 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACCACA CGTCGGCCGA CCCGATCCGG GTGCTGATCG TCGACGACCA CGCGGTGGTG 
CGTCGCGGTA TCCGCACCTA TCTCGAATTG TTGGGCGGCA TCGAGGTGTT GGCCGAGGCC
AGCGACGGCC AGGACGCGCT GGACACGCTC AAGGCGATGG CGGCTCACCG CGAACTGCCC
GACGTCGTCC TGCTCGACCT GGTGATGCCC AGAATGGACG GTGTGCTCGT CACCTCGCGG
ATCACCAGTC AATACCCGGA CGTGCGCGTG GTCATCCTGA CGAGTTTCGG TGAGCTGGAG
CGGATCCAGG GCGCGCTGGC CAACGGCGCC TCGGGGTACC TGCTCAAAAG CGCCGGACCG
GACGAGGTCG TCGCGGCCAT CCAAGCTGCC GCCCGCGACG AGATGTTCCT GGACCCGGCG
GTGGCCCGGC GGTTGACCCG GCAGATGGTC TCACCGCCCA CCGGCGTGGG TGCCCTGACC
GAACGGGAAC GGGACGTGTT GATCCTCATC GCGAACGGCT ATTCCAACAA GGAGATCGCC
GACGAGTTGG TGATCAGTGA ACGCACGGTG CGCACGCATG TCAGCAGCAT CCTGCGCAAG
CTGCGGCTGA GCTCCCGCAC GCAAGCGGCA CTGGTCGCCG TACGAGAGGG GCTCGTACCC
CCACAGACGT GA
 
Protein sequence
MNHTSADPIR VLIVDDHAVV RRGIRTYLEL LGGIEVLAEA SDGQDALDTL KAMAAHRELP 
DVVLLDLVMP RMDGVLVTSR ITSQYPDVRV VILTSFGELE RIQGALANGA SGYLLKSAGP
DEVVAAIQAA ARDEMFLDPA VARRLTRQMV SPPTGVGALT ERERDVLILI ANGYSNKEIA
DELVISERTV RTHVSSILRK LRLSSRTQAA LVAVREGLVP PQT