Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_32730 |
Symbol | |
ID | 8388597 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 3552993 |
End bp | 3554324 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644977300 |
Product | trypsin-like serine protease with C-terminal PDZ domain protein |
Protein accession | YP_003135070 |
Protein GI | 257057238 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.229019 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCGACA ACGACCCCTC CGCACAGGAC AGGCACACCC CGGAACCGGG AACGCCTGAG CAGCCGAATC CGGAAGCGCA TACCGGGTCG TCGGAGCGTG AGGACACCGA GCGGTATCGG GAGGGTGGTC AGGGAACCGA CGAGTTCCGC TACCCGCCCC GGACCCCGAT CGGCGACTAC GCCCAGGGCG GATATCCCAC ATCGCCCCAT ACCCAGTCCG GCTACACCGC CTATTCGCTC GGGCCGACAC AGTCGTCGCC GGAGCGCCGT GGGATGCCGG GCAGGCTCGT CGCGGGGGTC GCCCTGCTCG CTTTGCTCGT CGGTGGGGGA GCGGGCGCCG CGACCGGTTA TCTCGCGGCG GACACGGCTA CGGAGTCGTC CGCGCCGAAC GCACTCAACC AGCCGCCGCC TCAGGCCAGA CAGACCGGTA ACGCTCCTGA AGGAAGTGTC GAGGCCGTCG CCGAGAAGCT CAAACCCAGT GTGGTGCAGC TGCAGGTCAG AGGATTCGGT TCGGCCAACG AGGGTTCCGG TTTCATCCTC AGCGAGGACG GTTACATCCT CACCAACAAC CACGTGGTCG AGGCGGCGGC TCGCGGAGGG CGGATCACCG TGGTGTTCCA CGACGGTGAG GAGACCTCGG CCAGGATCGT GGGTCGTGAC CCGACCACCG ACATCGCCGT CGTGCGCGCC GAGAACGTCA GTGGTCTGAC CACCGTTGAA CTCGGACGTT CCGACGACCT TCGGGTGGGG GAGTCGGTGG TCGCGATCGG GTCGCCGTAC GAGCTCGCGG GAACCGTGAC GGCCGGGATC GTCAGTTCGT TGAACCGTCC GGTGACCGCG GGCGGGCAGG GTGATCAGAC CACCGTCATG GACGCCATCC AGACCGACGC GGCCATCAAC CCCGGTAACT CCGGGGGGCC GTTGGCCAAC ATGCAGGGCC AGGTCATCGG CATCAACTCC GCCATCTACA GCCCCTCGCA GGGCGGCAAT GTCGGGATCG GATTCGCCAT CCCCATCGAT CAGGCGCGTA GGACCGCCGA CGAGATCATC AAGAACGGCC ATGCCACCCA GACCTACATC GGGGCGACCG TCGGGAACGC TCCGAGCGGT GGCGCGGTCA TCGGTGACGT GGAGTCGGGC AGCCCCGCGG AACAGGCGGG CCTCAAATCG GGGGACGTGG TCGTGAAGAT GGACGACCGA CGCATCGAGG ACGCCAACGC GCTCGTCGCA TCGATCCGTA CCCGGGCGCC CGGTGAGAAG GCCACGTTCA CGCTCGCCGA CGGCAACACC GTCGAAGTCA CACTCGGTGG GCAGCCGGTG CGGGTCAATT GA
|
Protein sequence | MTDNDPSAQD RHTPEPGTPE QPNPEAHTGS SEREDTERYR EGGQGTDEFR YPPRTPIGDY AQGGYPTSPH TQSGYTAYSL GPTQSSPERR GMPGRLVAGV ALLALLVGGG AGAATGYLAA DTATESSAPN ALNQPPPQAR QTGNAPEGSV EAVAEKLKPS VVQLQVRGFG SANEGSGFIL SEDGYILTNN HVVEAAARGG RITVVFHDGE ETSARIVGRD PTTDIAVVRA ENVSGLTTVE LGRSDDLRVG ESVVAIGSPY ELAGTVTAGI VSSLNRPVTA GGQGDQTTVM DAIQTDAAIN PGNSGGPLAN MQGQVIGINS AIYSPSQGGN VGIGFAIPID QARRTADEII KNGHATQTYI GATVGNAPSG GAVIGDVESG SPAEQAGLKS GDVVVKMDDR RIEDANALVA SIRTRAPGEK ATFTLADGNT VEVTLGGQPV RVN
|
| |