| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_30030 |
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| Symbol | |
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| ID | 8388327 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 3246913 |
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| End bp | 3248376 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644977034 |
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| Product | drug resistance transporter, EmrB/QacA subfamily |
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| Protein accession | YP_003134807 |
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| Protein GI | 257056975 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00171806 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACA CCGCGAGCAT CGCGACCACC GCACCCGAGC GTGAACCGAC ACCACCACGA
ACCGCCCTGT TGATCGCCGT TCTGGTCGCC TCGTCATTCG TCATGATCCT CAACGAGACG
ATCCTGAGCG TCGCGCTCCG GGCCCTGACC ATCGATCTCG GCGTTTCGAC GACGACGGCA
CAGTGGCTCA CCAGCGGCTT CCTCCTGACC ATGGCCGTGG TCATCCCGAC CACGGGCTTC
CTGCTCGAAA GGTTCACGCC ACGGCAGGTC TTCCTGGCGT CGTTGACGCT GTTCAGCCTC
GGAACGTTGA TCAGCGGCTC GGCTCCGGGC TTCGGCGTGT TGCTGGTCGG GCGTGTCGTC
CAGGCCTGCG GCACCGCGGT GATGGTGCCG CTGCTGATGA CGTCGATCAT GCGGCTGGTG
CCCGAGGAGC GGCGAGGGGC GACGATGGGC ACGATCACGA TCGTCATCGC CGTCGCCCCG
GCTCTCGGGC CGACCATCGG CGGGGCGGTG CTGTCCGCGC TGGGGTGGCG CTGGATGTTC
TGGATCGTCC TCCCGTTGTC GCTGATCGCG TTGACCATCG GGGCCCTCTG GCTACGCCTG
GACAGCCAGA CCCGGCAGGT ACCGCTGGAC CTGCTCTCGG TGCTGCTGTC CGCACTCGGT
TTCGGTGGCG TGCTCTACGG CCTGTCCGCT GTCGACGAAC CCGGTGATGG GCGGCAACCG
GTTCCGCCGT GGCTGGCGCT CGTCGTCGGA GTCGGGGCGC TGGCCGTCTT CACCTACCGC
CAGGTCCGGT TGCAACGCCG TGACCGGGCG CTGTTGGACC TGCGCCCGTT CACCTACCGC
CCCTTCGTGG TCGCCCTGAT CCTGGCCATG CTGGTGTTCA TGTGTCTGCT GGGGGTCGCG
TCGATCCTGT TGCCGCTCTA CCTGCAGACC GTGTTGGGCA CCAGCACGTT CGTCAGCGGG
CTGGCGGTGT TGCCCGGTGG GCTGATCCTG GGCTTGCTCG GACGACCGGT CGGGGCGCTG
TTCGACAGGA TCGGCGCCCG TCCGCTGGTG ATCCCGGGTG CCCTGACCGC TGCGGTGTCG
CTGTGGTTGT TCACCACGCT CGGCCCCCAC TCGTCACTGG CCGCGGTGAT CGTCATCCAC
GTCGTCCTCA TGATCGGGCT TTCGTTGATG ATGACGCCGC TGATGACCGA ATCGCTCGGG
GCCCTACCCG ACCACCTGTA CTCCCACGGC AGCGCCATCA TCGCCACACT GCAGCAGGTC
GCCGGCGCGC TCGGCACGGC CGTCTTCGTC ACGGTCGCCG CCCTCGGCAG CGCGGCGGAC
AGCGTCAGCC CCGACGACGT CGGTCTGCAC GCCGCGTTCG TCGTCGCCGG ATGCATCGGG
GTGCTCGTCT TCGTCACGGC GTTGTTCGTC CGCCGTCCTT CCCCCTCGAA AGCCACCCCG
GCCCCCAAGG AGGAGAAGGT CTGA
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| Protein sequence | MTDTASIATT APEREPTPPR TALLIAVLVA SSFVMILNET ILSVALRALT IDLGVSTTTA
QWLTSGFLLT MAVVIPTTGF LLERFTPRQV FLASLTLFSL GTLISGSAPG FGVLLVGRVV
QACGTAVMVP LLMTSIMRLV PEERRGATMG TITIVIAVAP ALGPTIGGAV LSALGWRWMF
WIVLPLSLIA LTIGALWLRL DSQTRQVPLD LLSVLLSALG FGGVLYGLSA VDEPGDGRQP
VPPWLALVVG VGALAVFTYR QVRLQRRDRA LLDLRPFTYR PFVVALILAM LVFMCLLGVA
SILLPLYLQT VLGTSTFVSG LAVLPGGLIL GLLGRPVGAL FDRIGARPLV IPGALTAAVS
LWLFTTLGPH SSLAAVIVIH VVLMIGLSLM MTPLMTESLG ALPDHLYSHG SAIIATLQQV
AGALGTAVFV TVAALGSAAD SVSPDDVGLH AAFVVAGCIG VLVFVTALFV RRPSPSKATP
APKEEKV
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