| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_29300 |
|---|
| Symbol | |
|---|
| ID | 8388254 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 3171899 |
|---|
| End bp | 3173128 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644976961 |
|---|
| Product | phosphoserine phosphatase |
|---|
| Protein accession | YP_003134735 |
|---|
| Protein GI | 257056903 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0560] Phosphoserine phosphatase |
|---|
| TIGRFAM ID | [TIGR00338] phosphoserine phosphatase SerB
[TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.78907 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.19351 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCCCCA CCCCCGTCCT GATCACCACG ACGGGGCCGG ACAAGCCCGG TGTGTCCTCG
GTGTTGTTCG CGGCCCTGAC CCAGCAAGGT GTCGAGGTCC TCGACATCGA ACAGGTCGTG
ATCCGCGGGC AGCTCGTCCT CGGCGTGCTC GTGACCGTCG AAGACGATCC GGAGGGCCTG
CAGGAAACGG TCGAGCAGGC CATGGCCACG GTGTCGATGA ACGTGGACGT GCGAATCGGG
TCGGCGATCG GTTCCGACCC GTTCGCACCC TCCCGACGCG GTTCGACACA CGTGTTGGTA
CTGCTCGGCA GGCCGGTCAC GGCCCGCGCG TTCACCCAGG TGGCGCGCAG GCTCGCGGAG
GTCGGCGCGA ACATCGACAC GATCCGGAGC ATCGCCGACT ATCCGGTGAC CGGCCTCGAG
CTCTACGTCT CCGTCGCGGA GGACACCCCC GAGGCCGACA GCGAGCTGCG CACCATGCTC
GCCGACGTGG GTGCGCGGGG CGGGCTGGAC GTGTCGATCG AGCGCGCCGG ATTGTCGCGG
CGGGCCAAGC GCCTCGTGGT GTTCGACGTG GACTCGACCC TCATCCAGGG TGAGGTCATC
GAGATGCTCG CCGCACACGC CGGGGTCGAG CCGGAGGTAC GCAAGATCAC CGACGCGGCC
ATGCGTGGCG AGCTGAACTT CAGCGAGTCC TTGATCCGCC GGGTGTCGTT GCTCGAAGGA
CTGCCGGAGT CGGTGCTCGA CGAGGTGGCC GAACAGATCG AGCTCACGCC CGGTGCCCGC
ACCACGGTGC GCACGCTGAA ACGCCTCGGT TTCCGTTGCG GTGTCGTCTC GGGCGGGTTC
ACCCGCATCA TCGACGGCCT CGTCACCGAG CTGGGACTCG ACTTCGCCGT CGCCAACGAG
CTGGAAGTGG TGGACGGCAA ACTCACCGGC CGGATCGTGG GTGACATCGT GGACAGGGCG
GCCAAAGCCG AAACGCTCAA ACGGTACGCC GCCGGATACG GCATTCCGCT CGCCCAGTGC
GTGGCCGTGG GTGACGGTGC CAACGACATC GACATGCTCA CCGCCGCGGG CATGGGCATC
GCGTTCAACG CCAAACCCGC CCTGCGGGAG GTGGCCGACG CGGCCCTGTC GTACCCCTAT
CTCGACGCGG TGCTGTTCAT GCTCGGTGTG ACCCGCGCGG AGGTGGAGGC AGCCGACATC
GCGGACGGGC TGCCGCTCGT TCGGCCATGA
|
|---|
| Protein sequence | MSPTPVLITT TGPDKPGVSS VLFAALTQQG VEVLDIEQVV IRGQLVLGVL VTVEDDPEGL
QETVEQAMAT VSMNVDVRIG SAIGSDPFAP SRRGSTHVLV LLGRPVTARA FTQVARRLAE
VGANIDTIRS IADYPVTGLE LYVSVAEDTP EADSELRTML ADVGARGGLD VSIERAGLSR
RAKRLVVFDV DSTLIQGEVI EMLAAHAGVE PEVRKITDAA MRGELNFSES LIRRVSLLEG
LPESVLDEVA EQIELTPGAR TTVRTLKRLG FRCGVVSGGF TRIIDGLVTE LGLDFAVANE
LEVVDGKLTG RIVGDIVDRA AKAETLKRYA AGYGIPLAQC VAVGDGANDI DMLTAAGMGI
AFNAKPALRE VADAALSYPY LDAVLFMLGV TRAEVEAADI ADGLPLVRP
|
|---|
| |