| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_28300 |
|---|
| Symbol | |
|---|
| ID | 8388154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 3070669 |
|---|
| End bp | 3072396 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644976861 |
|---|
| Product | beta-galactosidase/beta-glucuronidase |
|---|
| Protein accession | YP_003134638 |
|---|
| Protein GI | 257056806 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.290276 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGC GATCGATGTC CACGCCGTGG ACCTACCAGG TGAGTCCGGA CAACGCTCTT
TTCGAACATC CCCGACCGCA ACTGGTGCGT CCGCGCTGGC GCACGTTGAA CGGTCTTTGG
GAGTACGTGG GACGGGACGA GAACGGGACC GTTCATCGCG GTGAGCGGAT CCTGGTGCCG
TATCCGCCGG AATCCCGGTT GTCGGGCATC GGACGTCGGG ACGAGACGAT GTGGTACCGA
CGCACCGTCG AGGTGCCCGC GGACTGGCGG GACGGACGGG TGCTGCTGCA CTTCGGCGCG
GTCGACCAGA TCGCGACGGT GTGGGTGAAC CACCAGTTGC TCGCCCGTCA CGAGGGCGGC
TACACGGCGT TCACCGTGGA TATCACCGAC GTGCTGCGTT CCGACGCCGA ACAAGAGGTC
CTGGTGCGGG CGGAGGACGA GGGCAACCGC GGTACGTTCC CCGTCGGCAA ACAGGCGAAC
CAACCCGGCG GCATCCTGTA CACCGGGTGC TCGGGGATCT GGCAGACCGT GTGGCTTGAA
TCCGTGCCCA CGGTGCACAT CGCCGATCTC GACATCGTGC CCGACCTCCG TGGTCTCGAT
CTCACCGTCC ACGTGGCGGG CGCGGTCGAC GGTGTGACGG TCGACGTGTC GCTCGCCTCG
GAAGCCGGAC AGGTGACCCG TGGACGTGGT GAGCCCGGTC GGCCACTGCG CCTCGACGTG
CCCGATCCGC GCCTGTGGAG CCCGGACGAC CCACATCTCT ACGATCTGAG GGTGCGCTTG
CTCGACGGCG ACGGAACGGT GCTCGACGAG GTGACCAGCT ACGCCGCTCT GCGCACGATC
GAGGTCCGAG CCGGCGAGGG ACCACCACGC ATCCTGCTCA ACGACCGGCC GGTGTTCCTC
CACGCGCCGT TGGACCAGGG ATACTGGCCC GACGGCATCT ACACCGCGCC CACCGATGAG
GCGCTGCGGT TCGACCTGGA GCGCGTCAAG GCGCTCGGCT TCAACAGCGT GCGCAAACAC
GTCAAAGTGG AGCCGATGCG TTGGTACCAC TGGGCCGACC GGCTGGGTCT GTTGGTGTGG
CAGGACATGC CGTCGTTGCC GGTCGTGCTG GACAACCCTC CCGGCCCCCA GGCCCCACCG
GTGGCCGCGG CGAGGCGACG TTTCGAGGCC GAACTGCACG AACTGCTCGA CCAGCTGCGC
AACGTTCCGT CGATCGTGCT GTGGGTGGTG TTCAACGAGG GGTGGGGGGA GTACGACACC
GCCCGCATCG CCGAGGAGGT CAAGGCCGCC GACCCGACCA GACTCGTCAT CGCGGCGAGC
GGGGTCAACT GCTGCCATTC CCAGCCCGAT TCGGGCGCGG GCGACGTCTA CGACGATCAC
ACCTACGTGG GGCCGGGGCG GCCGGAGGTG ACCGATTCCA GAGCCGTCGT CGACGGCGAG
TTCGGCGGCG TGGGGTTGGT CGTGGACGGG CACGTCTGGC CCGGTGAGCC GATGGCGTAC
GAGATGGTGC CCGACCGGGA ACGGCTCACC GCACGATACG TGGAGCTCAG CGAGGAACTG
GAGGTCCTGG CACGCGACCG CCTCTGCGGG GCCGTCTACA CCCAACTCAC GGACGTGGAG
AACGAGGTCA ACGGGCTGCT CACCTACGAC CGCAGGGTCG TGAAGGTGAC GGTACCGGTG
GTGGCCGAAC GCAACCGCGC CGTCATCGCC GCGGGGTCGC GGTCCTGA
|
|---|
| Protein sequence | MSARSMSTPW TYQVSPDNAL FEHPRPQLVR PRWRTLNGLW EYVGRDENGT VHRGERILVP
YPPESRLSGI GRRDETMWYR RTVEVPADWR DGRVLLHFGA VDQIATVWVN HQLLARHEGG
YTAFTVDITD VLRSDAEQEV LVRAEDEGNR GTFPVGKQAN QPGGILYTGC SGIWQTVWLE
SVPTVHIADL DIVPDLRGLD LTVHVAGAVD GVTVDVSLAS EAGQVTRGRG EPGRPLRLDV
PDPRLWSPDD PHLYDLRVRL LDGDGTVLDE VTSYAALRTI EVRAGEGPPR ILLNDRPVFL
HAPLDQGYWP DGIYTAPTDE ALRFDLERVK ALGFNSVRKH VKVEPMRWYH WADRLGLLVW
QDMPSLPVVL DNPPGPQAPP VAAARRRFEA ELHELLDQLR NVPSIVLWVV FNEGWGEYDT
ARIAEEVKAA DPTRLVIAAS GVNCCHSQPD SGAGDVYDDH TYVGPGRPEV TDSRAVVDGE
FGGVGLVVDG HVWPGEPMAY EMVPDRERLT ARYVELSEEL EVLARDRLCG AVYTQLTDVE
NEVNGLLTYD RRVVKVTVPV VAERNRAVIA AGSRS
|
|---|
| |