Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_28030 |
Symbol | |
ID | 8388127 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 3037420 |
End bp | 3038925 |
Gene Length | 1506 bp |
Protein Length | 501 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644976834 |
Product | glutamate synthase (NADH) small subunit |
Protein accession | YP_003134611 |
Protein GI | 257056779 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
TIGRFAM ID | [TIGR01317] glutamate synthases, NADH/NADPH, small subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.328015 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGCTGATC CCAAGGGTTT TCTGCGGTAC GAGCGGGTCG ATCCGCCCAA GCGTCCTCGC AAGGAGCGAG TCGGGGACTG GCGGGAGGTC TATGTCGAGC TCGCCCCTGA GGAACGCGAC CGTCAGGTGC GCACCCAGGC GACGCGCTGC ATGGACTGCG GTATCCCGTT CTGTCACTCG GGCAGCGCGG GGTGTCCGCT GGGCAACCTG ATCCCGGAGT GGAACGACCT CGTGCGGCAG GGTGACTGGG GACGCGCGGT CGACCGCCTG CACGCCACGA ACAACTTCCC CGAGTTCACG GGCAAGTTGT GCCCGGCGCC GTGCGAGGCG GCGTGTGTGC TGTCGATCTC CCCCGACTCG GGTGGGGCGG TGAGCATCAA GCGCGTCGAG GAGACGATCG CCGAACACGC GTGGGAAGAG GGGTACCTGC GTGCGGAGCA CGCGGCGGTG CCCACGGGCA AGGCGGTGGC GGTGGTGGGC TCGGGGCCCG CCGGGTTGGC GGCAGCACAG CAACTCGTCC GCGCCGGTCA CGAGGTGACG GTGTTCGAGC GGGACGACCG GTTGGGCGGA CTGCTTCGTT ACGGAATCCC CGAGTTCAAG ATGGAGAAGA AGGTGCTCGA CCGCAGGCTC GCGCAGCTGC GGGAGGAGGG GGTTCGCTTC GTCACGAGCT GCGAGGTCGG TGTCGATGTC ACCGTGGAGC AGCTGCGGGA GCGCTTCGAC GCCGTGGTGC TCGCGGTGGG AGCGCTGCGG GGGCGTGACG ACACCACCAC GCCGGGGCGG GAGCTGAAGG GCATCCACCT GGCGATGGAA CACCTCGTGC CCGCCAATCG CGAGTGCGAG GGCGACGGTC CCACTCCCGT GAGCGCCGAG GGCAAGCACG TCGTGATCAT CGGGGGCGGT GACACGGGGG CCGACTGCTA CGGCACGGCG ATTCGCCAGG GCGCGTTGTC GGTGACGCAG TTGGACCGCT ATCCCCAGCC ACCGTCCACT CGGGACGACT CCCGTTCGCC GTGGCCCACG TGGCCCTACA TTCTGCGCAC GTATCCCGTT CATGAGGAGG CGGGGCAGCG GCGTTTCGCC GTGGGTGTGC AGCGGTTCGT CGGGGACGAC GACGGTCACG TGAGGGAGCT CGAACTCCGT CGGGTGGAGG TGCGCAAGGA CCCCGAGACC GGACACCGCG AGGTCGTCCC GGTCGACGAC GAGGTCGAGC GCATCCCGGC CGATCTGGTG TTGCTCGCCA TCGGCTTCGA GGGCGTGGAG CACATGCCGT TGCTGGACGA GTTGGGTCTG TCGTTGAACG GGCGCGGCAC GCTCTCGTGC GGCGCCGACT GGCAGACGCA GGTGCCGGGT GTGTTCGTGT GCGGTGACGC TCATCGGGGC GCGTCCCTGG TGGTGTGGGC CATCGCGGAG GGGCGTTCGG CCGCGAGAGC GGTGGACGAA TACCTGATGG GGGAGTCCGA CCTGCCGGCT CCGGTCCACC CCACGGCGTT GCCGCTGGCC GTCTGA
|
Protein sequence | MADPKGFLRY ERVDPPKRPR KERVGDWREV YVELAPEERD RQVRTQATRC MDCGIPFCHS GSAGCPLGNL IPEWNDLVRQ GDWGRAVDRL HATNNFPEFT GKLCPAPCEA ACVLSISPDS GGAVSIKRVE ETIAEHAWEE GYLRAEHAAV PTGKAVAVVG SGPAGLAAAQ QLVRAGHEVT VFERDDRLGG LLRYGIPEFK MEKKVLDRRL AQLREEGVRF VTSCEVGVDV TVEQLRERFD AVVLAVGALR GRDDTTTPGR ELKGIHLAME HLVPANRECE GDGPTPVSAE GKHVVIIGGG DTGADCYGTA IRQGALSVTQ LDRYPQPPST RDDSRSPWPT WPYILRTYPV HEEAGQRRFA VGVQRFVGDD DGHVRELELR RVEVRKDPET GHREVVPVDD EVERIPADLV LLAIGFEGVE HMPLLDELGL SLNGRGTLSC GADWQTQVPG VFVCGDAHRG ASLVVWAIAE GRSAARAVDE YLMGESDLPA PVHPTALPLA V
|
| |