| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_27690 |
|---|
| Symbol | |
|---|
| ID | 8388093 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 2994573 |
|---|
| End bp | 2996057 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644976800 |
|---|
| Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
|---|
| Protein accession | YP_003134577 |
|---|
| Protein GI | 257056745 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.751852 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCCGCA CCTACACGAT CCGCACCTTC GGGTGCCAAA TGAACGTGCA CGATTCGGAG
CGCCTCGCCG GGCAGCTTGA GGAAGCTGGG TACTCACTTG CCGCCGAGGG CGAGCAAGCC
GACGTGGTCG TGTTGAACAC CTGTGCGGTG CGTGAGAACG CCGACAACAA GCTCTACGGT
CATCTCGGTC ACCTGCGCGC CGCCAAGGCG GCCAATCCCG GGATGCAGAT CGCCGTCGGC
GGCTGTTTGG CGCAGAAGGA CCGGGGAGAG ATCGTGCGAC GTGCGCCCTG GGTGGACGTC
GTGTTCGGTA CGCACAACCT GGGCTCGCTG CCCGTGCTGC TGGAACGGGC CCGGCACAAC
GCCGAGGCGC AGGTGGAGAT CGTGGAGGCG CTGGAGACCT TCCCGTCCAC GCTGCCCGCG
CGACGCGAAT CGGCCTATTC GGGCTGGGTC TCGATCTCAG TGGGCTGTAA CAACACGTGC
ACCTTCTGTA TCGTGCCGTC ACTGCGCGGC AAGGAACGCG ACCGTCGTCC CGGCGAGATC
CTCGCCGAAG TGGAAGCGCT CGTCGCCGAG GGAGTGCTGG AAGTAACGCT GCTGGGACAG
AACGTGAACT CCTACGGCGT CGAGTTCGGT GACCGGTACG CGTTCGGCAA ACTGCTGCGG
TCGTGCGGTT CCATCGACGG TCTGGAGCGC GTGCGGTTCA CCTCGCCGCA CCCGGCCGCG
TTCACCGACG ACGTGATCGA CGCGATGGCG GAGACCCCCA ACGTCTGCCA TCAGCTGCAC
ATGCCGCTGC AGTCGGGTTC CGACCGCGTG TTGAAGGCGA TGCGTCGCTC CTACCGGTCG
GCTCGATTCT TGTCCATCTT GGACAAGGTG AGGGCGGCCA TGCCGGACGC GGCCATCACC
ACCGACATCA TCGTGGGCTT CCCCGGCGAG ACCGAGGAGG ACTTCCAACA GACTCTCGAA
GTGGTACGGC AGGCGCGGTT CTCCAGCGCC TTCACGTTCC AGTACTCGCC GCGTCCCGGT
ACCCCGGCCG CCGAGATGCC CGACCAGGTG CCGAAGGAAG TCGTGCAGGA GCGCTACGAC
CGGCTCGTCG AACTGCAGAA CGACATCTCC TGGCAGGAGA ACCGCAAGCT CGTCGGCACC
ACGGTGGAGC TGCTCGTCGC CACGGGGGAA GGTCGTAAGG ACGCCGAGAC CCACAGGATG
AGTGGCCGTG CCCGTGACGG TAGGTTGGTT CACTTCACGC CGCGCGGTGA CGCCATCGAC
CGGAAGATCC GTCCGGGCGA CATCGTCGAG ACCACGATCA CCTATGCGGC GCCGCACCAC
CTCGTGGCCG ACGGGGACGT GTTGTCGCAT CGTCGCACCA AAGCGGGTGA CAATGTGGAG
GCCGGGCTGC GGCCTCGAAC GAAAGGCGTC AGCCTCGGGC TGCCCTCGTT CGGCCCGAAG
CCCACGGCCA CCGTGAGCGC CGGTATGGAA GGGTGTTCGC TGTGA
|
|---|
| Protein sequence | MTRTYTIRTF GCQMNVHDSE RLAGQLEEAG YSLAAEGEQA DVVVLNTCAV RENADNKLYG
HLGHLRAAKA ANPGMQIAVG GCLAQKDRGE IVRRAPWVDV VFGTHNLGSL PVLLERARHN
AEAQVEIVEA LETFPSTLPA RRESAYSGWV SISVGCNNTC TFCIVPSLRG KERDRRPGEI
LAEVEALVAE GVLEVTLLGQ NVNSYGVEFG DRYAFGKLLR SCGSIDGLER VRFTSPHPAA
FTDDVIDAMA ETPNVCHQLH MPLQSGSDRV LKAMRRSYRS ARFLSILDKV RAAMPDAAIT
TDIIVGFPGE TEEDFQQTLE VVRQARFSSA FTFQYSPRPG TPAAEMPDQV PKEVVQERYD
RLVELQNDIS WQENRKLVGT TVELLVATGE GRKDAETHRM SGRARDGRLV HFTPRGDAID
RKIRPGDIVE TTITYAAPHH LVADGDVLSH RRTKAGDNVE AGLRPRTKGV SLGLPSFGPK
PTATVSAGME GCSL
|
|---|
| |