Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_27020 |
Symbol | |
ID | 8388026 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 2913927 |
End bp | 2917481 |
Gene Length | 3555 bp |
Protein Length | 1184 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644976736 |
Product | methionine synthase (B12-dependent) |
Protein accession | YP_003134513 |
Protein GI | 257056681 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.12372 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.910685 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCATGG ACAGTCGGTT TCTCACCGAG CTGGACCGAC GGGTGCTCGT CGCGGACGGC GGTATGGGGA CGGCCCTGCA GGGGTTCGAC CTGACGCTGG ACGACTTCGC CCAGCTGGAG GGGTGCAACG AGGTCCTCAA CGACACCCGC CCCGACGTGG TGACGGCGGT GTACCGCAGT TTCCTGGAAG CCGGCTCCGA CGCCATAGAG ACGAACACGT TCGGCACCAA CTACGGCAAC TTCGGCGAGT ACGGCATCCT CGACCGGATC AGGGAGCTGG CCGAGAAGGG GACGGTGCTG GCACGGCAGT GCGCCGACGA GTACTCGACG CCGGATCGGC CCCGGTTCGT GCTCGGCTCG ATGGGGCCGG GTACGAAACT GCCCACGTTG GGTCACGCTC CGTACGCAGT GCTGCGTGAC GCGTACGTCG AGAACGCTCT GGGGATGCTC GACGGTGGCG TGGACGCCGT GTTGGTGGAG ACCTCGCAGG ATCTGCTGCA GGCCAAGGCG GCGATCGTCG GCGCGAAACG GGCGATGGCC AGGGCCGGAC GGCGGGTGCC GATCATCGCT CAGGTCACGG TGGAGCAGAC GGGCACCATG CTGGTCGGCT CCGAGATCGG CGCGGCGCTC ACGGCACTGG AACCGCTCGG CATCGACCTG ATCGGGATGA ACTGCGCCAC GGGGCCCGCC GAGATGAGCG AACACCTGCG GGTGCTGTCC GAGCACGCGA GGGTGCCGAT CTCGGTGATG CCCAACGCCG GTCTGCCCGA ACTGGGGCCG GACGGCGCGG TGTATCCGCT GCGGCCGGAC GAGTTGGCCG AGGCGTTGGC CACGTTCGTC ACCGAGTTCG GTGTCCGCCT GGTGGGCGGC TGTTGCGGCA CCACCCCCGA GCACGTGCGG GCGGTGGTGG AGGCGGTGTC GTCGTTGAGG CCGAAGGAAC GGCGGCCCGA GCACACCCCC GCGGTGTCGT CGGTGTACCA GTCGGTGCCG TTCAAGCAGG ACGCCTCGAT CCTCAACGTC GGGGAGCGGA CCAACGCCAA CGGTTCGAAG GCGTTCCGCC AGGCGATGCT GGAAGGCCGT TACGACGACT GCGTCGAGAT CGCCAAGGCG CAGACCCGGG AGGGTGCGCA CGTCCTCGAC CTGTGTGTGG ACTACGTGGG CCGGGACGGC ACCACGGACA TGGCCGAGCT GGCCTCACGG CTGGCCACGG CCTCCACGTT GCCGATCATG GTGGACTCCA CCGAGCCCGA GGTGGTGCGG ACCGGTCTCG AACACTTCGG CGGGCGGTGC GCGATCAACT CGGTCAACTA CGAGGACGGC ACCGGCCCGG ACAGCAGGTA CCGGCGGGTT CTGGAACTCG CGGTCGAGCA CGGCGCGGCC GTGGTGGTCA CCTGCATCGA CGAGGAGGGG CAGGCGCGGA CGGCCGAGTG GAAACTGCGC GTGGCCGAGC GTGCCATCTC CGACCTGACC ACCAACTGGG GCCTGGACAA GTCGTCGATC ATCATCGACT GTCTCGTGTT CCCCATCACC ACGGGGCAGG AGGAGGTCCG AAAGGACGCC CTGGAGACCA TCAACGCGAT TCGCCAGCTG AAGCGGCGTC ACCCCGACGT CATGACGACA CTGGGGCTGT CGAACGTGTC GTTCGGGCTC AATCCGGCCG CTCGGCAGGT GTTGAACTCG GTCTTCCTGC ACGAATGTCG GGAAGCCGGA TTGGATTCGG CCATCCTGAA CTCGTCCAAG ATCCTGCCGA TGAACAAGAT CGAGGACGAG CCGAGGCAGG TGGCGCTCGA TCTCGTCTAC GATCGACGTC GGGACGGCTA CGACCCGCTA CAGCGGCTCA TGCAGCTGTT CGAGGGCAAG ACCGCGTCGT CGGCGCGTGC CTCGCGGGCC GAGGAACTGG CGAAGCTGCC GCTGTTCGAG CGGTTGGAGA AGCGCATCGT CGAAGGCGAG ACCACCGGTC TGGAGGAGGA CCTCGACGCG GCGATGCGGG AGAAGAAGCC GATCGACATC ATCAACGAGC ACCTGCTCGC CGGGATGAAG GTGGTCGGTG ACCTGTTCGG CTCGGGTCAG ATGCAACTGC CGTTCGTGTT GCAGTCGGCC GAGACGATGA AGGCGGCGGT GGCCTATCTG GAACCGCACA TGGAAAAGAC CGACGCCGAC GGCAAGGGCA AGCTCCTGCT GGCCACGGTC AAGGGCGACG TTCACGACAT CGGCAAGAAC CTGGTCGACA TCATCGTGTC GAACAACGGC TACGACGTCG TGAACATCGG CATCAAGCAG CCCATCAACG CGATCCTGGA GGCGGCGGAG GAGCATCAGG TCGACGCCAT CGGCATGTCC GGCCTGCTGG TGAAGTCCAC CGTCGTCATG AAGGAAAACC TGCAGGAGAT GAACGCGCGC GGGGTCGCGA CGAAGTACCC GGTGCTGCTG GGTGGGGCCG CGTTGACCCG GACCTACGTC GAAAACGATC TGGACGAGAT CTACGAAGGT GACGTCCGTT ACGCCAAGGA CGCCTTCGAG GGGCTCAAGT TGATGGACCG GATCATGGCC GTCAAGCGTG GTGAGACCCC GGAGGAGGAC GCCGCCGAGG AGGCGAAGAA GGCCGAGCGT AAGGCACGTC GGGAACGGTC GTTGCGTATC GCAGAGAAGC GCAGGGCCGA ACAGGGGCCG GAACCGGATC TGTACGACAC GACGCGCTCG GACGTCGATC CCGACGTCCC CGTGCCGGTA CCGCCGTTTT GGGGAGCGAA GGTCGTCAAA GGCGTGGCCG TGGCGGACTA CCTGTCGTTG CTCGACGAGC GGGCGACCTT CTTCGGACAA TGGGGGCTGC GTGGAGCGAG GAAGGGCGAG GGACCGTCGT ACGAGGAACT GGTGGAAAGC GAGGGCAGGC CACGGCTGAG GGCGTGGATC GACGAGCTGT CCACCCAAGG CATCCTCGCT CACGCCGCGC TCGTCTACGG ATACTTTCCG TGCTACTCGG AAGGTAACGA CCTGGTGGTG CTGGAGAAGG ACGAACCGGA CGCGTTGGAG CGGCTGCGGT TCACGTTCCC CCGCCAGCGG CGTGATCGCA GGCTCTGTCT GGCCGACTTC TTCCGTTCGA AGGAGAAGGC CGAGCAGACC GGACAGGTGG ACGTACTGCC CATGCAGCTC GTCACGATGG GCCAACCCAT CGCCGACTAC GCCAATGAGT TGTTCGCACG CAACGCCTAC CGTGATTACC TGGAGGTCCA TGGGCTCGGC GTGCAACTCA CCGAGGCGTT GGCCGAGTAC TGGCACCGCC GGATCCGGCA GGAATTGCGG TTCCCCTCGG GTGCCCCCGT GGCGGCGGAG GACCCGGAGG ATGTGCAGCA GTTCTTCAGG CTCGGGTACA GGGGGGCTCG ATTCTCCTTC GGCTACGGTG CTTGCCCGGA TCTGGAAGAC CGCGCGAAGA TCGTGGAGCT GCTGGATGCC GGACGCATCG GTGTGACGTT GTCCGAGGAG TTCCAGTTGC ATCCTGAACA GTCGACGGAT GCGATCGTGG CCCACCACCC TGAGGCTAAG TACTTCAACA CTTAA
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Protein sequence | MTMDSRFLTE LDRRVLVADG GMGTALQGFD LTLDDFAQLE GCNEVLNDTR PDVVTAVYRS FLEAGSDAIE TNTFGTNYGN FGEYGILDRI RELAEKGTVL ARQCADEYST PDRPRFVLGS MGPGTKLPTL GHAPYAVLRD AYVENALGML DGGVDAVLVE TSQDLLQAKA AIVGAKRAMA RAGRRVPIIA QVTVEQTGTM LVGSEIGAAL TALEPLGIDL IGMNCATGPA EMSEHLRVLS EHARVPISVM PNAGLPELGP DGAVYPLRPD ELAEALATFV TEFGVRLVGG CCGTTPEHVR AVVEAVSSLR PKERRPEHTP AVSSVYQSVP FKQDASILNV GERTNANGSK AFRQAMLEGR YDDCVEIAKA QTREGAHVLD LCVDYVGRDG TTDMAELASR LATASTLPIM VDSTEPEVVR TGLEHFGGRC AINSVNYEDG TGPDSRYRRV LELAVEHGAA VVVTCIDEEG QARTAEWKLR VAERAISDLT TNWGLDKSSI IIDCLVFPIT TGQEEVRKDA LETINAIRQL KRRHPDVMTT LGLSNVSFGL NPAARQVLNS VFLHECREAG LDSAILNSSK ILPMNKIEDE PRQVALDLVY DRRRDGYDPL QRLMQLFEGK TASSARASRA EELAKLPLFE RLEKRIVEGE TTGLEEDLDA AMREKKPIDI INEHLLAGMK VVGDLFGSGQ MQLPFVLQSA ETMKAAVAYL EPHMEKTDAD GKGKLLLATV KGDVHDIGKN LVDIIVSNNG YDVVNIGIKQ PINAILEAAE EHQVDAIGMS GLLVKSTVVM KENLQEMNAR GVATKYPVLL GGAALTRTYV ENDLDEIYEG DVRYAKDAFE GLKLMDRIMA VKRGETPEED AAEEAKKAER KARRERSLRI AEKRRAEQGP EPDLYDTTRS DVDPDVPVPV PPFWGAKVVK GVAVADYLSL LDERATFFGQ WGLRGARKGE GPSYEELVES EGRPRLRAWI DELSTQGILA HAALVYGYFP CYSEGNDLVV LEKDEPDALE RLRFTFPRQR RDRRLCLADF FRSKEKAEQT GQVDVLPMQL VTMGQPIADY ANELFARNAY RDYLEVHGLG VQLTEALAEY WHRRIRQELR FPSGAPVAAE DPEDVQQFFR LGYRGARFSF GYGACPDLED RAKIVELLDA GRIGVTLSEE FQLHPEQSTD AIVAHHPEAK YFNT
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