| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_26930 |
|---|
| Symbol | |
|---|
| ID | 8388017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 2900299 |
|---|
| End bp | 2903598 |
|---|
| Gene Length | 3300 bp |
|---|
| Protein Length | 1099 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644976727 |
|---|
| Product | glycosyl transferase |
|---|
| Protein accession | YP_003134504 |
|---|
| Protein GI | 257056672 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase
[COG1215] Glycosyltransferases, probably involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.938513 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAATCC GGGGATCGTG GATCGTCGCG GGTGTGGTCG GCCTGCTGTT CGTCATGACG
TTGCTCATCG CCGGCTGGAC CATGTCGGAG GTCGGCAACG ACGCCGAGCC GCAACGGGGA
TTCGACAGCC AATCGAATGT CCCGAGCTCG GTGCTGAACG GTGGCACGCT CGTCCATGTC
CAAGGTGATT CGGTGTCGTC CACGTCGATG CCGCCCCGAA CCGTGGCATT GACCTTCGAC
GATGGTCCCG ATCCGGTGTG GACCCCCCAG ATCCTCGAAA TACTCGACAA ACACGACGTA
CCCGCCACGT TCTTCGTGGT CGGCTCGATG GCCGCGCGTT ACCCGGACCT GGTCCGCAGC
ATCCACGAAT CCGGTTCCGA ACTGGGGGTG CACACGTTCA CCCACCCCGA TCTCGCCCAG
GTCTCCGCGT GGCGGGTGGA ACGCGAGCTG AACCAGACTC AGATGGCGCT CGCGGGAGCG
GCCGGAGTGA CCACACGACT GTTCCGGCCC CCGTACTCGT CGACGACGGA GGCGCTCGAC
AACCCCGCCT ACGACGTCGT GCGCCAAGCC GGGGAACTCG GCTACATCAG CGTGTTCAGT
GACATCGACA GTGCCGACTG GCAGCGACCC GGGGTCGACG CCATCGTGCG CAACTCGATG
CCGCCGAACG GGCAGGGTGG CGTGGTGCTG TTGCACGACG CCGGCGGTGA CCGATCGCAG
ACGGTGGCCG CGCTCGACAT CCTCATCCCC CGCCTCAAGG AACAGGGCTA CCGGTTCAGC
ACCATCGCCG ATGTCATCGG CGCCGACCGC GCCGATCCCG CCTCCACGGA GGACCGGGTG
TCGGGCTCCG CGTTCGTCGC TGTGGTCAAT GGTGCTCTCG TCGTGGTGAG TGTGCTGAAA
TGGCTGCTGG TCGCGGTGGG CGTACTCACG GTGCTCCGGC TGCTGTTGCT CGTCGTGGTG
GCGGGCAGAC ACGCTGCCCG GCGCAGAGGC GCACGCTCTT GCTGGGGTCC GCCGGTCACC
GAGCCGGTAT CGGTGATCGT GCCCGCGTAC AACGAGGCCG CCAACATCGA GGCCACCGTG
AGATCAGCTG TCGCGAGTAC CCACCCGGTC GAGATCATCG TCGTCGACGA CGGGTCCACT
GACGGTACCG CCGACCTCGT GGAAGGGCTC GGACTTTCGG GTGTTCGGGT ACTGCGTCGA
CCGAACCGAG GGAAGGCCGC CGCGCTCAAC ACGGGGATCG CCGCCGCGTC GTACGACCTC
ATCGTCATGG TCGACGGTGA CACCGTGTTC GAACCGAACA CGGTGCACGA ATTGGTGCAG
CCGTTCGCCG ATCCGGAAGT CGGTGCGGTC TCGGGCAACG TCAAGATCGC CAACCGGGAG
ACGTTGCTGG CACGACTGCA ACACATCGAA TACGTCGTCG GGTTCAATGT GGATCGACGT
GTGCACGAGG TCATGCGTTC GATGCCGACC GTACCCGGTG CGGGTGGCGC GTTCCGACGT
TCGGCGCTGC TTCAGGTGGG CGGTTTGAGC GCCCAGACCC TCGCCGAGGA CACCGACCTC
ACCATCAGCA TCGGACGAGC CGGCTGGCGC ACGGTGTTCC AGGAGAAAGC GGTGACGTGG
ACGGAGGCCC CGACCACCGT ACGCCAGCTG TGGCGACAGC GATTCCGCTG GACGTTCGGC
ACGTTGCAGG CGTTGTGGAA ACACCGCAAG GCCATCGTCC AGCGTGGTGC CGCGGGTAGG
GTGGGCCGAT TCGGCATGTT GCACGTGGTG TGTTTCCAGG TCCTGCTGCC CATGATCGCC
CCGGTGATCG ACGTCTTCCT CGTCTACGGG GTGCTGTTCC TCGATCCGTG GACCACGGTG
CTGCTCTGGC TGACCATGCT CGGCATACAG GCGGCCGCGG CCGCGTACGC GTTCCATCTG
GACGGTGAAC GGAAGACGGT GTTGTGGTTG CTGCCCGCCC AGCAACTGAT CTACCGGCAA
CTGATGTACG TGGTGTTGAT GCAATCGCTG GCCGCCGCCG CGTCGGGGGT TCGGGTGCGG
TGGCAGCACA TGCGTCGTTC CGGGCTCACC CGGTTCCCGG CTGTTCAGGC CGCACAGAGT
GTCCCGGCAC CGAGGACCGC CTCCGAGAAC ACGCAGGACG TCTCGGTATC GTCACCGGTC
ACGCATGTCC CGTCCGGTTC GTCCGCCTCC GGAGGCCGGC GGAGCCGGGA ACGGTGGCTC
GACGTCCTGC GGGCGGCGGC CTTGGGACGG GTGATGCTGT ACCACACGAT GGGATGGCCG
TGGTTGAGCA TGGTGTTCCC CGCGATGGGG GTCATGTTCG CCGTCGGTGG TTCGTTGATG
GCGCGATCGT TGGGGAACCA GCCGCCCGTG GACGTCGTCG GCAGGCGCAT CGTACGGCTG
TTGCCGCCGC TGTGGGTGCT TGCCCTCGTG ATGGTGCCGT TGATGTTGGC GTTCGGCTGG
AGCGCGGCCA CGGAGGAGAG TTGGGCCAGC GACGCGTTGC ACTGGCCGGA GCTCGCGCTG
TGGATCTTCC CCGTTCTCGA TCCGCCGCAC AGCGATCTGG GCCTGGGCCG GGACGCGGCG
ATCGTGCTGT GGTACGTGCG CGCCTATCTG TGGTTCGTGC TGTTGACCCC CCTGCTGCTG
CGGCTGTTCC GTCGGTGGCC GCTCGTCACC ACGCTGACGC CTCTCGTCCT CGTCGCCTGT
GACGCCGTGC TCGGCTCACC CCTGTCCGGG ATGGACGACG TGGGACAGGG GGTGCTGGAC
TTCTGCACCT TCGGCGCCTG CTGGCTGCTC GGTTTCGCGC ATCGGGACGG GATGCTCACC
CGAGCCCGCA TCGGGACGCT CGTGGTGACG TCGGTGCTGT TGATATCGGC GGGCTTGTGG
TGGGCTGCGA CCCATCCGGC GTGGGGGTCT TACGACCTCA ACGAGATCCC GTTGGCGCAG
GCGTTGGTGA GTGCGGGCTT CGTGCTCGTG GCGTTGCGGG TCTCGCCGGA GCTGCGGCTG
CTCGACCGGG TGCCCGCGCT GAATCGGCTC GTCACCGTGC TCAACGCGCG GGCGGTCACG
GTGTATCTGT GGCACAACGT GGCCATCTAC CTCGCCGCCT CGCTCATCCT GTGGTGGGGG
GACTACTCAC AGGCGGAACA TCTCGCTGTG GCCGTGCTGT TGACGGCGGG CGCCGTGTTC
CTGTTCGGGT GGGTGGAGGA TGTGGCGGCG CGACGGCGCA TCCGGATCCT TCCGGGGGCC
CCGCCGAAAC CGAAACACGC CAGAACGCGC CTACGTAAGG CCAAGGTCGT CAGAGCCTGA
|
|---|
| Protein sequence | MRIRGSWIVA GVVGLLFVMT LLIAGWTMSE VGNDAEPQRG FDSQSNVPSS VLNGGTLVHV
QGDSVSSTSM PPRTVALTFD DGPDPVWTPQ ILEILDKHDV PATFFVVGSM AARYPDLVRS
IHESGSELGV HTFTHPDLAQ VSAWRVEREL NQTQMALAGA AGVTTRLFRP PYSSTTEALD
NPAYDVVRQA GELGYISVFS DIDSADWQRP GVDAIVRNSM PPNGQGGVVL LHDAGGDRSQ
TVAALDILIP RLKEQGYRFS TIADVIGADR ADPASTEDRV SGSAFVAVVN GALVVVSVLK
WLLVAVGVLT VLRLLLLVVV AGRHAARRRG ARSCWGPPVT EPVSVIVPAY NEAANIEATV
RSAVASTHPV EIIVVDDGST DGTADLVEGL GLSGVRVLRR PNRGKAAALN TGIAAASYDL
IVMVDGDTVF EPNTVHELVQ PFADPEVGAV SGNVKIANRE TLLARLQHIE YVVGFNVDRR
VHEVMRSMPT VPGAGGAFRR SALLQVGGLS AQTLAEDTDL TISIGRAGWR TVFQEKAVTW
TEAPTTVRQL WRQRFRWTFG TLQALWKHRK AIVQRGAAGR VGRFGMLHVV CFQVLLPMIA
PVIDVFLVYG VLFLDPWTTV LLWLTMLGIQ AAAAAYAFHL DGERKTVLWL LPAQQLIYRQ
LMYVVLMQSL AAAASGVRVR WQHMRRSGLT RFPAVQAAQS VPAPRTASEN TQDVSVSSPV
THVPSGSSAS GGRRSRERWL DVLRAAALGR VMLYHTMGWP WLSMVFPAMG VMFAVGGSLM
ARSLGNQPPV DVVGRRIVRL LPPLWVLALV MVPLMLAFGW SAATEESWAS DALHWPELAL
WIFPVLDPPH SDLGLGRDAA IVLWYVRAYL WFVLLTPLLL RLFRRWPLVT TLTPLVLVAC
DAVLGSPLSG MDDVGQGVLD FCTFGACWLL GFAHRDGMLT RARIGTLVVT SVLLISAGLW
WAATHPAWGS YDLNEIPLAQ ALVSAGFVLV ALRVSPELRL LDRVPALNRL VTVLNARAVT
VYLWHNVAIY LAASLILWWG DYSQAEHLAV AVLLTAGAVF LFGWVEDVAA RRRIRILPGA
PPKPKHARTR LRKAKVVRA
|
|---|
| |