| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_26410 |
|---|
| Symbol | |
|---|
| ID | 8387965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 2848601 |
|---|
| End bp | 2850124 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644976679 |
|---|
| Product | UDP-galactopyranose mutase |
|---|
| Protein accession | YP_003134456 |
|---|
| Protein GI | 257056624 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | [TIGR02734] phytoene desaturase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.739873 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACCG TGAAGGGGAG AACCGATCAC GTCGTCGTGG TCGGCGCCGG GTTGTCCGGG
CTCTCGGCAG CGTTGCACCT GGCCGGCCGT GGACGTCGCG TGACCGTGCT CGAACGGGAA
CCGGTCCCGG GAGGACGCGC GGGACGGCTC GACCGGGACG GCTACCTGTT CGACACCGGC
CCCACGGTGT TGACCATGCC GGACGTCGTG GAGAGCACCC TGGCCGCCGT GGGTGACTCG
GTGGCCGAAC GAGTACCCCT GGTCCGGGTG GAACCGGCGT ATCGCGCGGA GTTCGCCGAC
GGCAGCGGAC TCGACGTGCA CAGCGACGGC GAGGCCATGG CCGCCGAGGT GGAGCGCTTC
GCGGGCCCCG CCGAAGCGGC CGGATACCTA CGACTACGTG CCTGGTTGCA CAGCCTCTAC
CGGGTGCAGT TCGACCGGTT CATCGCGGCC AATCTGGACT CCCCCCTGGC GATGGTCACC
CCTGAACTGG CACGGCTGGC GGCGCTGGGA GGCTTTCGCA GACTGGAGGC GGCGGTCGGC
CGGTTCCTGA CCGACGACCG GCTCCGCAGG GTGTTCACCT TCCAATCCCT GTACGCGGGC
ACGTCACCGC AGCGCGCACT GGCGTTGTAC GCCGTGATCG CCTACATGGA CACCGTGTCC
GGGGTGTACT TCCCGCTCGG CGGCATGCGT GCCCTGCCGG ACGGTCTGGC CGCCGCGGCC
GAGGACGCCG GAGTGCGGTT CCACTACCGC ACCCACGTGA TCGCCTTGGA ACGCGACGGC
GACCGGGTGC GGGCCGTGCT CACCGCCGAC GGTGAGCGGC TGCCGTGCGA CGCCGTGGTG
CTCACCACCG AACTGCCGGT GTCCTACCGT CTGCTCGGCC GCGTACCGCG CAGGCCTCTG
CCGCTGCGCG CGGCGCCGTC GGCGGTGGTG CTGCATGTGG CCGCTCGACG TTCCTGGCCG
GGCGTGGGCC ACCACACGCT CCTGCTCGGC AACGCGTGGG CCGAGACGTT CCGTCAGCTC
ATCGTGGCCG GTGAACTGAT GCACGACCCT TCGTTGCTGG TCACCCGGCC CACGGCCACC
GATCCGCGAC TGGCGCCGGA GGGCACCGAC GTGCTGAGCG TGCTCGCCCC GGTACCGAAC
CTGCATCGCG CACCGATCGA CTGGGAACGT GAAGGACCGA GCTACGCCGA ACAGATCGCC
CGCGTGGCGG AGAAGAGACT CCTACCCGGA CTACCGGACG CCATCGGGTT CACCCATGTG
CTCACCCCGA AGGAGTGGGC GGAGTTGGAC ATGGTGGCGG GTACGCCCTT CTCCCTGGCG
CACACCTTCG GACAGACCGG CCCGTTCCGG CCGAGCAACC TGCCCCGCGG CGTGAGTAAC
GCGGTGCTCG CCGGGGGAGG CACCGTGCCC GGCGTCGGCG TGCCCACCGC CTTGCTGTCC
GGGAAGCTGG CCGCCGACCG GATCACCGGC CTCCCCGCCC CCACATCCGG CAGGACGACC
GTCATCAGCC ACGAGAGGCT CTGA
|
|---|
| Protein sequence | MRTVKGRTDH VVVVGAGLSG LSAALHLAGR GRRVTVLERE PVPGGRAGRL DRDGYLFDTG
PTVLTMPDVV ESTLAAVGDS VAERVPLVRV EPAYRAEFAD GSGLDVHSDG EAMAAEVERF
AGPAEAAGYL RLRAWLHSLY RVQFDRFIAA NLDSPLAMVT PELARLAALG GFRRLEAAVG
RFLTDDRLRR VFTFQSLYAG TSPQRALALY AVIAYMDTVS GVYFPLGGMR ALPDGLAAAA
EDAGVRFHYR THVIALERDG DRVRAVLTAD GERLPCDAVV LTTELPVSYR LLGRVPRRPL
PLRAAPSAVV LHVAARRSWP GVGHHTLLLG NAWAETFRQL IVAGELMHDP SLLVTRPTAT
DPRLAPEGTD VLSVLAPVPN LHRAPIDWER EGPSYAEQIA RVAEKRLLPG LPDAIGFTHV
LTPKEWAELD MVAGTPFSLA HTFGQTGPFR PSNLPRGVSN AVLAGGGTVP GVGVPTALLS
GKLAADRITG LPAPTSGRTT VISHERL
|
|---|
| |