| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_24570 |
|---|
| Symbol | |
|---|
| ID | 8387781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 2648359 |
|---|
| End bp | 2651598 |
|---|
| Gene Length | 3240 bp |
|---|
| Protein Length | 1079 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644976497 |
|---|
| Product | methylmalonyl-CoA mutase family protein |
|---|
| Protein accession | YP_003134278 |
|---|
| Protein GI | 257056446 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.990884 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCCG AACTCCATCG ACCTGTGAAC CCGGTCCGGT TCGTGACCGC CGCGAGCCTG
TTCGACGGCC ACGACGCCTC GATCAACATC ATGCGGCGCA TCCTGCAGTC GCAGGGTGCC
GAAGTGGTGC ACCTGGGGCA CAACCGGTCG GTCGACGAGG TCGTGACCGC CGCCATCTCG
GAAGACGTCC AGGGTGTCGC CATCAGCGCC TACCAGGGCG GGCATGTCGA GTACTTCACC
TATCTGGTGG ACCTGTTACG CGAACGCGGA GCGGGCCACG TGCGCGTGTA CGGCGGTGGC
GGCGGAGTCA TCGTGCGTGA CGAGATCGAG CTACTGCACT CCCGTGGGGT CGCGCGCATC
TTCTCGCCCG ACGACGGCCT GGAACTGGGC CTGCCGGGGA TGATCAACCT GATGATCCGG
GAGTGCGACG TCGACCTCGC CGAGAAGCAA GTCGGCTCCG TCGACGCGCT CCTGGGCGGG
GACATGCTGA CGCTGTCACG TGTCATCACA CAGCTGCAGC AGAACACCCT CCCCGACTCC
TGGCGCGCGG CCATCGCCGA GGCCGCGTCC GCGCGCACGG TCCCGGTCCT CGGTATCACC
GGTACGGGCG GGGCGGGGAA GTCGTCGTTG ACCGACGAGC TGGTCCGGCG ATTCCGGCTC
GACCAGGAGG ACAAGCTGCG GATCGCCGTC CTCGCCGTCG ACCCGACCCG GCGACGTGGC
GGTGGCGCGC TGCTCGGCGA CCGCATCCGC ATGAACAGTC TCGACAACGG TGACCGGATC
TTCTTCCGGT CGCTGGCCAC GCGCGGGACC GGGTCGGAGA TCCCCACCGG CCTCGCCGAC
GCGGTGTCGG CGTGCAAGGC CGCCGGGTAC GACCTCGTGA TCATCGAGAC GCCGGGCATC
GGGCAGGGCG ACGCCGGGAT CGTGGACTAT GTCGATCACA CGCTGTATGT CATGACACCG
GAGTTCGGTG CGGCGTCGCA GCTGGAGAAG ATCGACATGC TCGACTTCGC CGACGTCGTG
GCCATCAACA AGTTCGAGCG GCGCGGGGCC GAGGACGCCC GCCGTGACGT GGCACGACAG
CTGATCCGCA ATCGTGAGGA GTTCGGTGCC TCACCCGAGG ACATGCCGGT CTTCGGCACC
AGCGCGGCGA AGTTCAACGA CGACGGCGTC ACGGCCCTCT ACCAGCATCT GCGGGACGGG
CTCGCCGAGC TGGGGCTGTC CGTCTCAGCC GGGACACTGC CCCGGGTCTC CGGCAAGGTG
TCCAGCGACA CCAGCGTCAT CATCCCCGGT AGCCGCACGC GGTACCTCGC CGAGATCGCC
GAAACGGTGC GGAACTACCA CGAGCGCACC CGGCAGCAGG TGGAAGCGGT GCGCAAGCGG
GAACAGCTGA TCGCCGCGCG GGACGCGCTG GCCGCCGAGG GCGCGGCCAC CGAAGACCTC
GACCGGCTGA TCGACCAGGC GGACGCGGCC GTGGCCGATG ACACCAGGGC GCTGTTGGAG
GGCTGGGAGG AACTGGCCGA GTCGTATCGC GGGGAGGAAC TCGTCTTCAC GGTGCGGGAT
CGGGAGATCC GGACCGGCCT GTGGCGGGAG ACGCTGTCGG GCAGTCGTAT CCCGCGGGTG
GCGTTGCCGC GGTACACCGA CAAGGGCGAG CTGCTGTCGT TTTTGCGGCG GGAACATCTT
CCCGGTTACT TCCCCTTCAC CGCGGGGGTG TTCCCGTTCA AGCGCGACGG GGAGGACCCC
GCGCGGATGT TCGCCGGTGA GGGCGACGCC TTCCGCACCA ACCGGCGGTT CAAGTACCTC
TCGGCCGAGT CGGAGGCCAA GCGACTGTCG ACCGCGTTCG ACTCGGTGAC GTTGTACGGG
TGGGATCCGG ACACGCGTCC GGACATCTAC GGCAAGGTCG GCACGTCGGG CGTGTCCATC
GCGACGCTGG ACGACATGAA GGCGCTCTAC GACGGATTCG ACCTCACCGC GCCCACCACG
TCGGTGTCGA TGACCATCAA CGGTCCCGCG CCGACCATCC TGGCGTTCTT CCTGAACACG
GCCATCGACC AGCGGATGGA CGCCTTCCGC GCCGAGCACG GTCGCGAGCC CACCGCCGAG
GAGGCCGCCG AGATCCGGGC GTGGACGCTG CGACAGGTGC GCGGCACCGT GCAGGCCGAC
ATCCTCAAGG AGGACCAGGG GCAGAACACC TGCATCTTCT CCACCGAGTT CTCGCTACGG
ATGATGTCGG ACATCCAGGA GTGGTTCATC GCCAACGGTG TCCGCAACTT CTACTCCGTG
TCGATCTCGG GCTACCACAT CGCCGAAGCG GGGGCGAACC CCATCACGCA GCTGGCCTTC
ACCCTCGCCA ACGGCTTCAC CTACGTCGAG TCGTACCTGG CTCGCGGCAT GCACATCGAC
GACTTCGCGC CCAACCTGTC GTTCTTCTTC TCCAACGGCA TGGACGCGGA GTACTCGGTG
CTGGGCCGGG TGGCCCGCCG CATCTGGGCC ATCGCGATGC GCGAGCGCTA CGGGGCGAAC
GAGCGGTCGC AGAAGCTCAA GTACCACGTG CAGACATCGG GTCGCTCGTT GCACGCCCAG
GAGATGAGCT TCAACGACAT CCGCACGACC CTCCAGGCGT TGTGCGCGCT GTACGACAAC
GCGAACTCGT TGCACACCAA CGCCTACGAC GAGGCGATCA CCACGCCCAC CGAGAACTCG
GTGCGTCGCG CGCTGGCCAT CCAGATGATC ATCAACAAGG AGTGGGGCCT GTCGAAGAAC
GAGAACCCGC TGCAGGGCTC GTTCATCATC GACGAACTCA CCGACCTGGT CGAGGAAGCC
GTGCTCGCCG AGTTCGAACG CATCGCCGAA CGCGGCGGTG TGCTCGGGGC GATGGAGACC
GGCTACCAGC GGGGCAAGAT CCAGGACGAG TCGATGCTCT ACGAACGGCT CAAGCACAAC
GGGTCGTTGC CGATCGTGGG TGTCAACATG TTCCGCAACC CCAATCCCGA GGACGACGAG
GTGGAGGTGG AGCTCGCCCG GGCCACCGAG GAGGAGAAGC AGTCGCAGCT GCGGCGACTG
GCCGACTTCC ACGAGCGACA CCGTGAGGAG GCCCCGCGGG CGCTGGCTCG GTTGCGCGAG
GCCGCGGCCA GCGGGGAGAA CGTGTTCGAG GTGCTCATGG ACGCGGTACG GGTGTGCTCG
CTCGGGCAGA TCACCCAAGC GTTCTTCGAG GTCGGCGGTC AGTATCGCCG GAACGTGTAA
|
|---|
| Protein sequence | MTSELHRPVN PVRFVTAASL FDGHDASINI MRRILQSQGA EVVHLGHNRS VDEVVTAAIS
EDVQGVAISA YQGGHVEYFT YLVDLLRERG AGHVRVYGGG GGVIVRDEIE LLHSRGVARI
FSPDDGLELG LPGMINLMIR ECDVDLAEKQ VGSVDALLGG DMLTLSRVIT QLQQNTLPDS
WRAAIAEAAS ARTVPVLGIT GTGGAGKSSL TDELVRRFRL DQEDKLRIAV LAVDPTRRRG
GGALLGDRIR MNSLDNGDRI FFRSLATRGT GSEIPTGLAD AVSACKAAGY DLVIIETPGI
GQGDAGIVDY VDHTLYVMTP EFGAASQLEK IDMLDFADVV AINKFERRGA EDARRDVARQ
LIRNREEFGA SPEDMPVFGT SAAKFNDDGV TALYQHLRDG LAELGLSVSA GTLPRVSGKV
SSDTSVIIPG SRTRYLAEIA ETVRNYHERT RQQVEAVRKR EQLIAARDAL AAEGAATEDL
DRLIDQADAA VADDTRALLE GWEELAESYR GEELVFTVRD REIRTGLWRE TLSGSRIPRV
ALPRYTDKGE LLSFLRREHL PGYFPFTAGV FPFKRDGEDP ARMFAGEGDA FRTNRRFKYL
SAESEAKRLS TAFDSVTLYG WDPDTRPDIY GKVGTSGVSI ATLDDMKALY DGFDLTAPTT
SVSMTINGPA PTILAFFLNT AIDQRMDAFR AEHGREPTAE EAAEIRAWTL RQVRGTVQAD
ILKEDQGQNT CIFSTEFSLR MMSDIQEWFI ANGVRNFYSV SISGYHIAEA GANPITQLAF
TLANGFTYVE SYLARGMHID DFAPNLSFFF SNGMDAEYSV LGRVARRIWA IAMRERYGAN
ERSQKLKYHV QTSGRSLHAQ EMSFNDIRTT LQALCALYDN ANSLHTNAYD EAITTPTENS
VRRALAIQMI INKEWGLSKN ENPLQGSFII DELTDLVEEA VLAEFERIAE RGGVLGAMET
GYQRGKIQDE SMLYERLKHN GSLPIVGVNM FRNPNPEDDE VEVELARATE EEKQSQLRRL
ADFHERHREE APRALARLRE AAASGENVFE VLMDAVRVCS LGQITQAFFE VGGQYRRNV
|
|---|
| |