| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_24530 |
|---|
| Symbol | |
|---|
| ID | 8387777 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 2643781 |
|---|
| End bp | 2645295 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644976493 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003134274 |
|---|
| Protein GI | 257056442 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1306] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.49378 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGGTGA CGGCGGTGTC AGCGGCCGTG GCGATTCCGT TGAGCATCGG CGATCGACCC
GACGCCACGA TCCTGGGCTT GCCCGGTGAG ACGATCGGCC CCACCGGCAT ACGCGATGTC
GTCATCAGCT CCCAGCACGG CCTCGAAGGA TTACATGCCA CATTGGACGA ACAGCCGTTG
CCGTTGCGTC GGGACGGGAA CTGGCTGCGA CCCGACATCG GTGAACTGCC CGAGGGCTGG
CACACGCTCG TGGTCACGCC ACCACCGGAC TTGTTCGGAA ACGCCACGCC AGCCCAAGTC
ACCTTCAAAG TCGACGCCAC TCCCCCCGAG CTGACGGTAC AGCCGCCCGA ACCCGTCAAG
CCCGGCACGA TCGGCGAGAT CCGTGGTATC GCACGGGATG CCGTCATCGT CTCGATGGGC
GACGAGGAAG TGCAGCCGGC CGAGGACGGT TCGTTCGTCC TTCCCGTGCG GGCCGATGCG
GGCACCGTCA CCATCACCGC CCGTGATGCG GCGGGCAACA CGGCTGTCGA AGAGGTCCCG
GTGCCGCTGC GGCATCCCGG CATGAAAGCC GTACACCTGA CGGCGAGCGC CTGGGCGAGC
CCCGAGCTGC GGGAGCCCGT GCTGGACATG GTCCGGGAAG GCCGGATCGA CACCGTACAA
CTCGACATCA AGGACGAAAG CGGCCAGATC GGATACGCCT CACAGGTTCC GCTGGCTCAG
CGGATCGGCG CCAACACCCG GCTCTACGAC GCTCGAGAGG CCTTGGACGT ACTGCACTCG
GAAGGGGTGC ACGTAGTGGG CAGACTCGTC GCCTTCCGCG ATCCCATCCT CGGCAGAGCG
TCCTGGGAGG AGGGCGAATA CGACCGGGTC ATCCAGAACA CCGAAGGAAA CGCCTGGTCG
GGATACGGCG AATACTCCTT CACCAACTTC GCCGACCCCG TGGTACGGGC CTACAACATC
GCACTGGCCG AGGAAGCCGC CGAACTCGGT TTCGACGACA TCCTCTACGA CTACATCCGT
CGACCCGACG GCGACGTCTC ACAGATGGTG TTTCCCGGTC TGACGACGAC CCCGGAGGAG
TCGATCGCGA GTTTCCTCGC CGAATCGCGT GTGGCCCTGC ACAAGCACGG CGCGTTCCAG
GGAGCGTCGG TGTTCGGCAT CGCCGCCAGT CGGCCCGAAC AGATCGCCCA GGACATCCCC
GCCATATCGG AACACGTGGA TTACGTGGCG CCGATGGTGT ACCCGTCGCA TTGGGGGCCC
GGCGAGTACG GCGTGGAGGA CCCGGAGAGC CAGCCGTACG ACATCACGGC GCGCTCGCTG
GCCGACTTCC AAGCATTGGT CGAGGACGGC CACGCGAAGG TCATACCGTG GTTGCAGGCA
TTCAGCATGA GCGTGCCTTA CGGCCCCGAG GAGATCCGTG CACAGATCGA GGCCGCAGCG
GACGTCGGCA TCGATTCGTT CCTCCTGTGG AATGCGGCAT GCCGCTATGA CGAACGGGCC
CTTCCCCCGA CGTGA
|
|---|
| Protein sequence | MAVTAVSAAV AIPLSIGDRP DATILGLPGE TIGPTGIRDV VISSQHGLEG LHATLDEQPL
PLRRDGNWLR PDIGELPEGW HTLVVTPPPD LFGNATPAQV TFKVDATPPE LTVQPPEPVK
PGTIGEIRGI ARDAVIVSMG DEEVQPAEDG SFVLPVRADA GTVTITARDA AGNTAVEEVP
VPLRHPGMKA VHLTASAWAS PELREPVLDM VREGRIDTVQ LDIKDESGQI GYASQVPLAQ
RIGANTRLYD AREALDVLHS EGVHVVGRLV AFRDPILGRA SWEEGEYDRV IQNTEGNAWS
GYGEYSFTNF ADPVVRAYNI ALAEEAAELG FDDILYDYIR RPDGDVSQMV FPGLTTTPEE
SIASFLAESR VALHKHGAFQ GASVFGIAAS RPEQIAQDIP AISEHVDYVA PMVYPSHWGP
GEYGVEDPES QPYDITARSL ADFQALVEDG HAKVIPWLQA FSMSVPYGPE EIRAQIEAAA
DVGIDSFLLW NAACRYDERA LPPT
|
|---|
| |