Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_24490 |
Symbol | |
ID | 8387773 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 2639437 |
End bp | 2641140 |
Gene Length | 1704 bp |
Protein Length | 567 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644976489 |
Product | fumarase |
Protein accession | YP_003134270 |
Protein GI | 257056438 |
COG category | [C] Energy production and conversion |
COG ID | [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region [TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.208028 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.69636 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCACTC CTGGGTCGGG GTCCTCCCCC GGCCGCACCA CACCTGAGTT CAACTACACC GATGTCCTCC CGCTGGGGCC GGACACCACC GAGTACCGGC TCGTGACGAC CGAAGGCGTG CGTGTCGTCG AGGCGGCGGG GCGCCGATTC CTGGAGATCG AGCCGGAGAC GTTGACCCTG CTGGCGCGTA CGGCCATCAC CGACATCCAG CACCTGCTGC GTTCGTCGCA TCTGGCGCAG CTGCGTGCGA TCGTCGACGA TCCCGAGGCC AGCGGCAACG ACCGGTTCGT GGCCATGGAC CTCCTGCGTA ACGCCGCCAT CTCCGCAGGC GGTGTACTGC CCATGTGCCA GGACACGGGC ACGGCCATCG TCATCGGCAA GCGTTCGGAG GGCGTGCTCA CCGGTGGGGA CGACGAACGA GCGCTGTCGA AAGGCATCTT CGACGCCTAT CAACAGCTGA ATCTGCGGTA CTCGCAGATG GCACCGCTGA CCTTCTGGGA GGAGCGCAAC ACCGGTACCA ACCTGCCGGC CCAGATCGAG CTGTTCCACA AGGACGACAC CGGGGACGAC AAGGCCGACC CCAGTTACGA GTTCCTGTTC ATGGCCAAGG GCGGCGGTAG CGCCAACAAG ACCTTCCTGT ATCAGGAAAC GAAGGCCGTG CTGAACCCGA AACGGCTCGC GCGGTTCTTG GACGAGAAGC TGCGCAGCCT CGGCACCGCG GCGTGTCCGC CCTACCATCT CGCGATCGTG GTCGGAGGCA TGTCCGCCGA GTACAACCTG AAGGTGGCCA AACTCGCCTC CGCACGTTAC CTGGACGAAC TGCCGCGGGA GGGTTCGGAA CTCGGCCACG GCTTCCGTGA CGTCGAGCTG GAACAGCAGG TGCTGGAGAT GACCCGCCAG TTCGGCATCG GAGCCCAGTT CGGCGGCAAG TACTTCTGCC ACGACGTCCG GGTGATCCGG CTTCCTCGAC ACGGCGCGTC CTGCCCCGTC GGCATCGCCG TGTCCTGTTC GGCCGACCGC CAGGCCAAGG CCAAGATCAC TCCGGAAGGC GTGTTCCTGG AGCAACTCGA ACGGGACCCG GCGCGCTTCC TGCCCGACGT GACCGCCGAC GAACTGTCGG ACGAGGTCGT CGAAGTGGAC CTGACCAAGC CGATGTCCGA GATCCGGCAG CAGTTGTCGA GCCTGCCGGT GAAGACGCGC CTGAGCCTGA CCGGCCCGCT GGTGGTGGCC CGCGACATCG CCCACGCCAA GATCGCCGAG CGGTTGGAGG CGGGCGAGCC GATGCCGCAG TACCTGCGGG ACCACCCCGT GTACTACGCG GGACCGGCGA AGACCCCCGA GGGCTACGCG TCCGGGTCCT TCGGGCCGAC GACGGCGGGA CGGATGGACT CCTACGTCGA ACAGTTCCAG GCCGCCGGCG GCTCCCTGGT GATGTTGGCG AAGGGCAACC GGTCGAAGCA GGTGACGGAG TCGTGCCGGA AGTACGGCGG CTTCTACCTC GGCTCGATCG GTGGTCCCGC GGCACGGCTG GCCCAGGACT GCATCAAGAA GGTCGAGGTC CTGGAATACC CCGAGCTGGG CATGGAAGCC GTGTGGCGGA TCGAGGTCGA GAATTTCCCC GCGTTCATCG TGATCGACGA CAAGGGCAAC GACTTCTTCG CCGACACGTC CGAACCGGTA CTGCAGATCT CGTTCCGCTC GTAG
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Protein sequence | MTTPGSGSSP GRTTPEFNYT DVLPLGPDTT EYRLVTTEGV RVVEAAGRRF LEIEPETLTL LARTAITDIQ HLLRSSHLAQ LRAIVDDPEA SGNDRFVAMD LLRNAAISAG GVLPMCQDTG TAIVIGKRSE GVLTGGDDER ALSKGIFDAY QQLNLRYSQM APLTFWEERN TGTNLPAQIE LFHKDDTGDD KADPSYEFLF MAKGGGSANK TFLYQETKAV LNPKRLARFL DEKLRSLGTA ACPPYHLAIV VGGMSAEYNL KVAKLASARY LDELPREGSE LGHGFRDVEL EQQVLEMTRQ FGIGAQFGGK YFCHDVRVIR LPRHGASCPV GIAVSCSADR QAKAKITPEG VFLEQLERDP ARFLPDVTAD ELSDEVVEVD LTKPMSEIRQ QLSSLPVKTR LSLTGPLVVA RDIAHAKIAE RLEAGEPMPQ YLRDHPVYYA GPAKTPEGYA SGSFGPTTAG RMDSYVEQFQ AAGGSLVMLA KGNRSKQVTE SCRKYGGFYL GSIGGPAARL AQDCIKKVEV LEYPELGMEA VWRIEVENFP AFIVIDDKGN DFFADTSEPV LQISFRS
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