Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_24120 |
Symbol | |
ID | 8387736 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 2601463 |
End bp | 2602704 |
Gene Length | 1242 bp |
Protein Length | 413 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644976454 |
Product | ribonuclease D |
Protein accession | YP_003134235 |
Protein GI | 257056403 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0108272 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.00823573 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | GTGGACAACG CAGATCACAG CTCCGGCACG CCGGGGGACT CTGCGCCGCT TCCGCTGACA GAGCCTGCGG AAGGCACCCC TGACGTCATC GCCGATCCCG ACACGTTGCG GGCGGCGTGC GAACGATTGG CCGAGGGCAG CGGAGCCCTC GCCGTGGATA CCGAACGTGC TTCCGGCTAC CGATACTGGC CGAAGGCATA TCTCATCCAG ATCCGGCGCG AAGGCGCCGG CACGTTTTTG ATCGATCCCA TCCCGTTGAG GGACCACTTC ACACCGCTGG CCGAAGTGAT GAACCAGGTC GAGTGGGTAC TGCATGCGGC CTCTCAGGAC CTGCCTTGTT TGGCCGAACT CGGTCTGCAT CCGCCTTCGC TGTTCGACAC GGAGTTGGCC GGTCGGCTCG CCGGCTACCA ACGGGTGGCG TTGGGGACGC TGGTGGAGTC GCTGCTGGGA TATCAGCTGG AGAAGGGACA CAGCGCGGCC GACTGGTCCC GACGACCGCT TCCACTCGAC TGGCTGAACT ACGCCGCGCT CGACGTGGAA CTGCTGCTGC CGTTGCGGGA GAAGTTGGAG GAGGAACTGG CGGCCTCGGG GAAACTCGAA TGGGCTCGTC AGGAGTTCGA AGCCGTCCGC ACCGCCAAAC CTCCCGCTCC TCGAGCCGAA CCGTGGCGAC GCACCTCGGG AATCCACAAA GTGCGTACCG CACGGGGCCT GGCGGCCGTA CGCGCACTGT GGGAGGCCAG AGACGAACTG GCGCGTCGAC GCGACCGGGC ACCCGGCCGC ATCCTGCCGG ACAGCGCGAT CATCAACGCG GTGTTGGCCG ATGCCCGAAC CTCGGCTGAT CTGGAGAAAC TCCCCGTGTT CCGAGGGCGG GTCCAACGTA AACAAGCCAC GCATTGGCTC CGGCAATTAC AGCGCGCACG CACCCTGCCC GAGTCCGAGC TCCCCAGCAC CGCCGTCACG TACGACGGTC CTCCGCCACC GAACCGGTGG GCCGAGAAGA ATCCGGACGC CGCGGCCCGG CTGGCCGCGG CGAAAGCCGC GCTGGCCGAC ATCGCCGAGC GGAACCGGCT TCCCGTGGAG AACCTGCTGC TGCCGGAGCT CGTCCGCCGC CTGTGCTGGC AACCCCCTGA GGACACGTCG CGGGAGTCCG TGGCCACCGC GCTCGCCGAG GGCGGTGCCC GGCCGTGGCA GATCGAGTTG ACGGCCGCGG AACTCAGCAA GGCACTGCGC GCACAGGCCT GA
|
Protein sequence | MDNADHSSGT PGDSAPLPLT EPAEGTPDVI ADPDTLRAAC ERLAEGSGAL AVDTERASGY RYWPKAYLIQ IRREGAGTFL IDPIPLRDHF TPLAEVMNQV EWVLHAASQD LPCLAELGLH PPSLFDTELA GRLAGYQRVA LGTLVESLLG YQLEKGHSAA DWSRRPLPLD WLNYAALDVE LLLPLREKLE EELAASGKLE WARQEFEAVR TAKPPAPRAE PWRRTSGIHK VRTARGLAAV RALWEARDEL ARRRDRAPGR ILPDSAIINA VLADARTSAD LEKLPVFRGR VQRKQATHWL RQLQRARTLP ESELPSTAVT YDGPPPPNRW AEKNPDAAAR LAAAKAALAD IAERNRLPVE NLLLPELVRR LCWQPPEDTS RESVATALAE GGARPWQIEL TAAELSKALR AQA
|
| |