Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_23370 |
Symbol | |
ID | 8387661 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 2523752 |
End bp | 2525359 |
Gene Length | 1608 bp |
Protein Length | 535 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644976389 |
Product | arabinose efflux permease family protein |
Protein accession | YP_003134171 |
Protein GI | 257056339 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.517259 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCCGCCAT CGGATTCTTC TCACTCGACA CGCGGAGGCT GCGTGACTTC TTCCATGTCC CCGCCCTCGC CCCGCGAGGA CAGCCGCACC AGCGTGGCGC GACCGTTGAC GGGGCTGCTG CTCGTGCTCT TCGTCGCGAT GCTCAGCTCG ACCGTCGTCT CCATCGCCCT GCCGCGGATC ATCGGGGCAC TGAACGGCAG CCAGACCCAG TACACCTGGG TGGTCACGGC GACACTGCTC ACGGCCACCG CCTCCACGCC GATCTGGGGA AAGCTGGCCG ACCTCTACAG CAAGAAAGCA CTCGTCCAGA TCGCGATCGG GATCTTCGTA GCCGGGTCGC TGATCAGTGG TTTCGCCCAG GACGCGGGAC AACTCATCGC CGCCCGCGCC TTCCAAGGAC TCGGTGTCGG TGGTCTGCAG GCACTCGTTC AGACGATCAT CGCGGCGATG ATCCCGCCGA AGGAACGGGG CCGTTACAAC GGTCTCCTCG GCGGCGTGAT GGCAGTGGCC ACCGTCAGCG GACCGTTGCT GGGTGGTGTC ATCACCGACA CGTCCTGGCT GGGCTGGCGT TGGTGCTTCT TCGTCGGCAT CCCGTTCTCC CTCGTGGCCC TGGTGGTCCT GCAGCGCTGG CTGCACCTGC CCGCGATCCG GGATCGGGAG ACCGTGCAGG TCGACTACGT CGGCGCCACG CTCATCGCCA TCGGCGTGAG CGTGCTGCTG ATCTGGGTGA GCTTCGTGGA CAACTCGTTC GCCTGGCTGT CGTGGCAGAC CGCCGCGCTG GTGGGCCCCG CTCTGGCGGT CCTCGCTATC GCCGTCTGGT GGGAATCGCG TGTGCCCGAG CCGGTGCTGC CGCTGTCGGT GATCCGCCAG CCCGCCCCCG CGCTGGCGAT CCTGGCCAGC CTCTCCGTGG GGATGGCGAT GTTCGGCGGC GCCGTGTTCC TCGGCCAGTA CTTCCAGGTC AGCCGTGGCT ACAGCCCCAC GGAAGCCGGA CTTCTCATGA TCCCGATGAT GGTGGGCACG TTCGTCTCGT CGACCGTCTC GGGACAGCTG GTCAGCCGTA GCGGAAGGAT CAAGTGGCAT ATCGTCACGG GCACGGTGAT CCTGGTCGCC GGTTTCGGTG TGCTCTCCAC GCTCGATCGC GAGACCCCGC TGCTCGTCGT CTTCACCGGC CTCTTCGCCG TCGGGGTCGG CGTCGGGATG TCGATGCAGA ACCTCGTGCT CGCGGTGCAG AACACGGTGG CGCTCCGTGA CGTCGGAGCG GCCAGTGCGT CGATCACGTT CTTCCGCTCA CTCGGTGGCA CCATCGGCAT CTCGATACTC GGCGCGGTGC TGGCCAACCG GGTCAGCGAC AGCGTCCAGA AGGGGCTACG GGAAGCGGGT GTCCCCGCCA CCGCCTCGGG TGGGGCGAGC AACCTCAATC TGGAGGCCCT GCCCGAGCCG ATCCGCGCGA TCGTGGAAAC GGCCTACGGC GAGGCGACGG GACACATCTT CCTGCTCTCC TCGATCATCG CGGTGGTCGG TGTCGTCGCG GCTTTGCTGC TCAAGCCCGC GCCGCTGCGC ACGACCCTGG ACGTGGAGCC GACCGAGAAG GACCAGGTTC GCTCCTGA
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Protein sequence | MPPSDSSHST RGGCVTSSMS PPSPREDSRT SVARPLTGLL LVLFVAMLSS TVVSIALPRI IGALNGSQTQ YTWVVTATLL TATASTPIWG KLADLYSKKA LVQIAIGIFV AGSLISGFAQ DAGQLIAARA FQGLGVGGLQ ALVQTIIAAM IPPKERGRYN GLLGGVMAVA TVSGPLLGGV ITDTSWLGWR WCFFVGIPFS LVALVVLQRW LHLPAIRDRE TVQVDYVGAT LIAIGVSVLL IWVSFVDNSF AWLSWQTAAL VGPALAVLAI AVWWESRVPE PVLPLSVIRQ PAPALAILAS LSVGMAMFGG AVFLGQYFQV SRGYSPTEAG LLMIPMMVGT FVSSTVSGQL VSRSGRIKWH IVTGTVILVA GFGVLSTLDR ETPLLVVFTG LFAVGVGVGM SMQNLVLAVQ NTVALRDVGA ASASITFFRS LGGTIGISIL GAVLANRVSD SVQKGLREAG VPATASGGAS NLNLEALPEP IRAIVETAYG EATGHIFLLS SIIAVVGVVA ALLLKPAPLR TTLDVEPTEK DQVRS
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