Gene Svir_23170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_23170 
Symbol 
ID8387641 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand+ 
Start bp2494163 
End bp2494783 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content69% 
IMG OID644976370 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003134152 
Protein GI257056320 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.946487 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.100375 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCCGTC AACGCCGTTA CCACCACGGC GATCTCCGAC GCGCCGTCAT CAACGCCGCC 
GTGGAGGTCA TCACCACCGA GGGCACCGTC GCCATCAGCC TGCGTGACCT CGCCCGCCGG 
GCCGGTGTGT CGCACGCCGC GCCCGCCCAC CACTTCAAGG ACAAGGCCGG TTTGCTCACC 
GCCATCGCGA TCGAGGGCTA CGAGATCCTG GCCGACTCGA TGCAGGAGGC ATTGGCCGCC 
ACTCCCATTC CGCTTCCGGA GATCGGCGTG CGGTACGTGA AGTTCGCCCT CGAGCATCCG 
GCGCACTTCG AGGTGATGTA CCGGCCGGAG CTCTACCACC GCGACGATCC GGAACTGTTG 
GCCGCCAAAC AGTGGGCTCG TAGAACTCTG CGGGCGGGCA TCGTCACGTT GCCGCACGGC 
CGCCGCGGCG AGGCCGCCGA ATTCGGTGTG ATCGCCGCCT GGTCGTTGGC ACACGGCTTC 
GCGGTCCTCG CCCGGAGCGG GAACCTCGCT GAGGACCTCG GCGAGGCCTC TCCCCTCTCC 
GTGTTCCGGC GCATCGCCCA GAGGACGATC CCGGCCGTCG ACCCCGTCAG CGAGGCCGAC 
GGCTCCACGA CGCGTCCCTG A
 
Protein sequence
MPRQRRYHHG DLRRAVINAA VEVITTEGTV AISLRDLARR AGVSHAAPAH HFKDKAGLLT 
AIAIEGYEIL ADSMQEALAA TPIPLPEIGV RYVKFALEHP AHFEVMYRPE LYHRDDPELL 
AAKQWARRTL RAGIVTLPHG RRGEAAEFGV IAAWSLAHGF AVLARSGNLA EDLGEASPLS 
VFRRIAQRTI PAVDPVSEAD GSTTRP