Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_20330 |
Symbol | |
ID | 8387360 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 2167558 |
End bp | 2169225 |
Gene Length | 1668 bp |
Protein Length | 555 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644976095 |
Product | phosphodiesterase/alkaline phosphatase D |
Protein accession | YP_003133877 |
Protein GI | 257056045 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3540] Phosphodiesterase/alkaline phosphatase D |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.616637 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACGCCA CCTCGCCTTG CGACGACCGT CCTCTTCGAC CTGAGCCCCC TGCGCTGACC CGACGCCAGG TCCTGCGCAC CGGTGGTGCG CTCACGGCGG CCGCCGGCGT CGGGATGGTC GCCACCCCCA CCGCCACGGC CGAACCCGAC CCGTTCGCCC ACGGTGTCGC CTCCGGCGAC CCGCTCCCCG ACGGGGTGCT GCTGTGGACC CGAGTGACGC CCACGCCGGA GGCGCAACCC GGATCAGGCC GTGGCCCCGA GGTCACCGTG AGCTGGGAGG TGGCCCCGGA CGAGACGTTC ACCGCCGTGG TCGCCCACGG CAGCGTCCGC ACCGGCCCCC AACGGGACCA CACCGTGAAG GTCGACGTCA CCGACCTCGC CCCCGACACC TGGTACTGGT ACCGCTTCCG CTACGGCGAC GCCGTCTCGC CTGTGGGACG CACCCGCACC GCACCCGCCG CGGACGCCGC GGTCACGCGT CTGCGCATGG GCGTGGTCTC CTGCTCGAAC TGGCAGGCGG GGCACTTCGC CGCCTACCGG CAGCTGGCCG ACCGTGACGA CCTCGATCTG GTCCTCCACC TCGGCGACTA TCTCTACGAA TACGGCGTCC CCTCGGACGG CAGCGCGGTC CGGGAACACG ACCCCGCCGT GGAGATGATC ACGCTCGCGG ACTATCGGCG TCGGCACGCG CAGTACAAAA CCGATCCGCA CCTGGCCGCC CTGCACGCAC GAGTGCCGTT CGTGGCGACC TGGGACGACC ATGAGTCCGC CAACAACGCC TGGTCGGGAG GCGCGGAGAA CCACACCGAG CCCGACGAGG GGACCTGGGC CGAGCGGCGT GCCGCCTCCC AACAGGCCTA CGCCGAATGG ATGCCCGTCC GCTACGAACC CGGCGGTCGA CTCTACCGAC GGTTCGGTTT CGGCACGCTG GCGGAGCTGT CCATGCTCGA CCTGCGCACC TACCGCAGCA AGCAGGTGGC CCACCCGTTC GACCGGGACC AGCACGACCC GGAACGCACC ATCGCGGGTG AGGAACAACT GCGTTGGCTC ATCGACGGCC TGGTGACCTC CTCGGCGCAG TGGAAACTCA TCGGCAACTC GGTGATGATC GCGCCGGTAC GTTTCCCCTC CACCCTGTCG ACCCGCGAAC TCCACGCGCT CACCGGGTTG ATCGGGCCCA TCGAAGGCAT CCCGTACAAC GTGGACCAAT GGGACGGCTA CACCGCCGAC CGTGCGACCG TGTTCTCGGC ACTGCGCGAC CACGGAATCC AGGACACCGT GTTCCTGACC GGGGACATCC ATTCCGGCTG GGCGTGCGAG CTGCCCGCCA ACCCGCTCAC CTACCCCCTC AACCGCAACT CCGTGGGCGT GGAACTGGTC TGCACCTCGG TGACCAGCGA CAACCTCGAC GACATCCTCG GTGTGCGGCC ACGGACCCTC TCCTTGGCCG TCGAGGCCGC CATCAAGGTG AGCAACCCGC ACGTGAAGTA CCTCGACTTC GACTCACACG GCTACTCGGT GCTGGAGGTC TCGCCGAGCG CGGTGCACAT GGACTGGTAC GCCCTCGACG ACCGCACCGA CCCGGAGAGC TCGGCCCGCC GCGTCATGTC CTACCGGGTG GCGGCCGGCA CCCAGCGAGT GACGCGCACC GAGGAGGTCC TGCGGTGA
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Protein sequence | MNATSPCDDR PLRPEPPALT RRQVLRTGGA LTAAAGVGMV ATPTATAEPD PFAHGVASGD PLPDGVLLWT RVTPTPEAQP GSGRGPEVTV SWEVAPDETF TAVVAHGSVR TGPQRDHTVK VDVTDLAPDT WYWYRFRYGD AVSPVGRTRT APAADAAVTR LRMGVVSCSN WQAGHFAAYR QLADRDDLDL VLHLGDYLYE YGVPSDGSAV REHDPAVEMI TLADYRRRHA QYKTDPHLAA LHARVPFVAT WDDHESANNA WSGGAENHTE PDEGTWAERR AASQQAYAEW MPVRYEPGGR LYRRFGFGTL AELSMLDLRT YRSKQVAHPF DRDQHDPERT IAGEEQLRWL IDGLVTSSAQ WKLIGNSVMI APVRFPSTLS TRELHALTGL IGPIEGIPYN VDQWDGYTAD RATVFSALRD HGIQDTVFLT GDIHSGWACE LPANPLTYPL NRNSVGVELV CTSVTSDNLD DILGVRPRTL SLAVEAAIKV SNPHVKYLDF DSHGYSVLEV SPSAVHMDWY ALDDRTDPES SARRVMSYRV AAGTQRVTRT EEVLR
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