| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_19180 |
|---|
| Symbol | |
|---|
| ID | 8387245 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 2039865 |
|---|
| End bp | 2040878 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644975984 |
|---|
| Product | formate dehydrogenase beta subunit |
|---|
| Protein accession | YP_003133766 |
|---|
| Protein GI | 257055934 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0437] Fe-S-cluster-containing hydrogenase components 1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0039184 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.491864 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCTCCG ACAACAGCCT GTACGGACCG CTCGACGATC CCGCCGCCGA CGCGGGGTAC
CGGGAACACC CACCGCGGGT CGGTTTCTTC ACCGACACGT CCATCTGCAT CGGCTGCAAG
GCGTGCGAGG TGGCGTGCAA GGAATGGAAC CTGGTGCCGG ACGACGGGTT CGACCTGTTG
GGCATGTCGT TCGACAACAC CGGCATGCTG GGAGCCAACT CCTGGCGACA CGTCGCGTTC
ATCGAGCAGG AGCGCCCACT CGGCGGGCAG GACACCGGCC TGCTCGGCCT CCCCACCGGG
CCGTCGGGCA GTCAGGCATC CGCCGACGCC GCCGAATCCG CCCTGCTGCA GGACGAACAG
CGCGGTGGCC GGCTGGGGAC CAGACCCGTG AATCTGGGCA TGCCGTCCTT CGAACTCCCC
GGCGCGAACA CGGGGACCGA GGGTCGCACC GAATTCCGGT GGTTGATGAG TTCGGACGTG
TGCAAACACT GCACTCACGC GGGCTGCCTC GACGTGTGTC CCACGGGGGC GTTGTTCCGC
ACCGAGTTCG GCACGGTCGT GGTCCAACAG GACATCTGCA ACGGCTGCGG CTACTGCGTG
TCCGCCTGTC CCTACGGCGT CATCGACAGA CGTGAGGGCG ATGGCCGCGC CTGGAAGTGC
ACACTGTGCT ACGACAGGTT GCGGGACGGC CTCGAACCCG CGTGCGCCAA GGCGTGCCCG
ACCGACTCGA TCCAGTTCGG ACCGTTGGAC GAGTTGCGGG AACGCGCCGC ACGACGGGTG
GACCAACTAC ACGACCTCGG TGTCACCGAA GCGCGGCTGT ACGGGCACGA CCCGGAGGAC
GGCGTGGGCG GGGACGGCGC GTTCTTCCTC CTGCTCGACG AACCGGAGGT GTACGGGCTG
CCACCGGACC CCGTGGTCCC GACGCGGGAC CTGCCGAACA TGTGGAGGTA CGCGGGATTG
GCGGCCTCGG CGTTCCTCGC CGCGGCCGTG TCGGCGTTCG CAAGGCGGGG ATGA
|
|---|
| Protein sequence | MISDNSLYGP LDDPAADAGY REHPPRVGFF TDTSICIGCK ACEVACKEWN LVPDDGFDLL
GMSFDNTGML GANSWRHVAF IEQERPLGGQ DTGLLGLPTG PSGSQASADA AESALLQDEQ
RGGRLGTRPV NLGMPSFELP GANTGTEGRT EFRWLMSSDV CKHCTHAGCL DVCPTGALFR
TEFGTVVVQQ DICNGCGYCV SACPYGVIDR REGDGRAWKC TLCYDRLRDG LEPACAKACP
TDSIQFGPLD ELRERAARRV DQLHDLGVTE ARLYGHDPED GVGGDGAFFL LLDEPEVYGL
PPDPVVPTRD LPNMWRYAGL AASAFLAAAV SAFARRG
|
|---|
| |