| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_18930 |
|---|
| Symbol | |
|---|
| ID | 8387220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 2012662 |
|---|
| End bp | 2013375 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644975960 |
|---|
| Product | 3-oxoacid CoA-transferase, A subunit |
|---|
| Protein accession | YP_003133742 |
|---|
| Protein GI | 257055910 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.0745996 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.773659 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGTCA CCTTCCCCTC TGCCGTCGAG GCGTTGCAGG ATCTCCTCTT CGACGGGATG
ACCCTCGCCG TCGGAGGTTT CGGGCTCAGC GGTATCCCCA CCGATCTGAT CGATGCGGTC
CGTGTCTCCG GTGTCCGCGA TCTCACCGTC ATCTCCAACA ACATGGGTGT CGACGGGATC
GGACTGGGCG TCCTCATCGA GAAAGGCCAG GTCCGCAAGG TCATCGCCTC CTATGTCGGC
GAGAACAAGC TCTTCGCCGA GCAGTACCTC GCCGGCGAGT TGGAGGTGGA GTTCAACCCG
CAGGGCACCC TCGCCGAGCG GCTCCGTGCC GGTGGCGCCG GTATCCCGGC CTTCTACACC
CGCACCGGTG TGGGGACGGA GGTCGCCGAG GGGAAGCCGA TGAAGGTCTT CGACGGTGTC
GAGTACGTCA TGGAACGCGG TCTCGTCGCC GACGTCTCCT TGGTCCGGGC CCACCGTGCC
GACGAGGCCG GCAACCTCAC CTACCGCTAC ACCGCCCGCA ACTTCAATCC GGTCGTCGCG
ACCGCGGGCC GTATCACCGT CGCGGAGGTC GAGGAGATCG TCCCCGATGG CGAGATCCAC
CCCGACCATG TCGTCACCCC GAGCATCTAC ATCCAGCGGC TGGTGGTGAC CACCAGCGAG
CACAAGCACA TCGAACAGCG CACCACGCGT CCCCGTGTCG CGGACCCCGT CTGA
|
|---|
| Protein sequence | MAVTFPSAVE ALQDLLFDGM TLAVGGFGLS GIPTDLIDAV RVSGVRDLTV ISNNMGVDGI
GLGVLIEKGQ VRKVIASYVG ENKLFAEQYL AGELEVEFNP QGTLAERLRA GGAGIPAFYT
RTGVGTEVAE GKPMKVFDGV EYVMERGLVA DVSLVRAHRA DEAGNLTYRY TARNFNPVVA
TAGRITVAEV EEIVPDGEIH PDHVVTPSIY IQRLVVTTSE HKHIEQRTTR PRVADPV
|
|---|
| |