Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_18870 |
Symbol | |
ID | 8387214 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 2005144 |
End bp | 2006517 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644975954 |
Product | L-serine ammonia-lyase |
Protein accession | YP_003133736 |
Protein GI | 257055904 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1760] L-serine deaminase |
TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.00891964 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCATCT CCGTGTTCGA CCTGTTCAAG GTGGGAATAG GGCCTTCAAG TTCACACACC GTCGGCCCGA TGCGGGCCGC GTACATGTTC GTCAATCGAC TGAACGGCTC CGGAAGGCTC GGTCGCACGG CACGGCTCCG GTGCGAGCTG TTCGGCTCAT TGGGGGCGAC CGGACACGGT CACGGCAGTG TCAAAGCCGT GGTGCTCGGG TTGTGCGGGG AACAGCCCCA CCTGGTCGAT CCGGTGGCGG CCGATCCGAC GGTGGCCACG GTGCGGGCAG CGCGACGGAT CAGTCTCGGC GGAAAACACG AGATCGATTT CCACGTCGAC GACGATGTGA TCCTGCATCG GCGAAAACGG CTCGATTTCC ACAGCAACGG CATGGTCTTC ACCGCCTACG ACGCCGAGGG GAGCGAAGTC GACCGTCGCG AGTACTACTC GGTGGGCGGG GGTTTCGTCG TGGACGAGGA CGAAGCCGGG CATCCCGTCT CGGTGGAGGA CCCCACCCCT GTCCGCTATC CGTTCACCAC CGGTGAGGAG CTGTTGAGGC TGACTCAGGA CACCGGACTG CGGGTCAGCG ACATCATGCT CGCCAACGAG ACGGCCTGGC GCGGGGAGAC GGAGATCAGG GCCGGGCTGC TGCACATCTG GTCGGTGATG CGCGAATGCG TCGAGCGTGG CACGCGCACC GAGGGGACGC TTCCCGGGGG GCTCAGGGTC CGACGTCGGG CGGCCGCCCT GCGACGCCGG CTTGAGTCTG ATGTGGATGA TGCAGACCCC TTGCGGGCCA TGGAATGGGT CACCTTGTAC GCACTCGCGG TGAACGAGGA GAACGCGGCG GGCGGGCGGG TGGTCACCGC GCCGACCAAC GGCGCCGCCG GGATCGTGCC CGCCGTGTTG CACTACTGCG CCCGTTTCCT GCCCCGCTTC GGCGACGACC ACGTCGTCCG GTTCCTCCTC ACCGCAGGCG CGATCGGCCT GCTGTTCAAG CGGAACGCCT CCATCTCCGG TGCCGAGGTC GGTTGTCAGG GTGAGGTGGG CTCGGCCTGC TCCATGGCCG CGGGGGGACT CGCCGAGCTC CTCGGAGGGA CTCCCGAACA GGTGGAGAAC GCCGCCGAGA TCGGCCTCGA ACACAACCTG GGACTGACCT GCGACCCGGT CGGCGGACTC GTGCAGATCC CCTGCATCGA GCGCAACGCG ATAGCGGCGA TCAAAGCCAT CACGGCGGCC CGCATGGCGG TCCGTGGTGA CGGCGTCCAC CACGTGTCGC TGGACAAAGC GATCAAGACC ATGCGGGAAA CCGGCGCGGA CATGAAGGAC AAGTACAAGG AGACCGCCCG CGGCGGGTTG GCTCTCAACA TCGTCGAATG CTGA
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Protein sequence | MTISVFDLFK VGIGPSSSHT VGPMRAAYMF VNRLNGSGRL GRTARLRCEL FGSLGATGHG HGSVKAVVLG LCGEQPHLVD PVAADPTVAT VRAARRISLG GKHEIDFHVD DDVILHRRKR LDFHSNGMVF TAYDAEGSEV DRREYYSVGG GFVVDEDEAG HPVSVEDPTP VRYPFTTGEE LLRLTQDTGL RVSDIMLANE TAWRGETEIR AGLLHIWSVM RECVERGTRT EGTLPGGLRV RRRAAALRRR LESDVDDADP LRAMEWVTLY ALAVNEENAA GGRVVTAPTN GAAGIVPAVL HYCARFLPRF GDDHVVRFLL TAGAIGLLFK RNASISGAEV GCQGEVGSAC SMAAGGLAEL LGGTPEQVEN AAEIGLEHNL GLTCDPVGGL VQIPCIERNA IAAIKAITAA RMAVRGDGVH HVSLDKAIKT MRETGADMKD KYKETARGGL ALNIVEC
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