| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_17700 |
|---|
| Symbol | |
|---|
| ID | 8387097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 1834817 |
|---|
| End bp | 1836313 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644975841 |
|---|
| Product | cobyric acid synthase |
|---|
| Protein accession | YP_003133623 |
|---|
| Protein GI | 257055791 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1492] Cobyric acid synthase |
|---|
| TIGRFAM ID | [TIGR00313] cobyric acid synthase CobQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0379411 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.993656 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAAGCAC ACAGAGGACG GACGGCGCGG CTCCTCGTCG CCGGGACGAC GTCCGACGCG
GGCAAGACCC TCGTGGCCAC GGGGCTGTGC CGGGCGTTCG CGCGGCGCGG GCTGAAGGTC
GCCCCGTTCA AGGCACAGAA CATGTCGAAC AATTCGATGG TCTGCGCCGA CGGCGCCGAG
ATCGGCCGGG CCCAATGGGT CCAGGCGCTC GCCGCCGGGG TCGAACCGGA GGCCGCGATG
AACCCCGTGC TGCTCAAACC GGGCGGCGAC CGACGCAGTC ATGTCGTCGT GCTGGGCCGA
CCGGCGGGAG AGCTCGGTTC GGCGGAATTC CCCGAGGGGC GCGCGCACCT CGCCGACGCC
GCGTACGCCG CGTACCGCGA TCTGTCCTCA CGCTTCGATC TCGTCGTCTG CGAAGGCGCG
GGAAGCCCCG CCGAGATCAA CCTGCGGGCG GGGGACTACG TGAATATGGG GTTGGCCCGG
CACGACGACA TCCCGACCGT GCTCGTCGGC GACATCGACC GCGGGGGTGT GTTCGCCGCG
TTCTACGGCA CCGTGGCGTT GCTGGAGCCC GCCGACCAAG CGCTCATCGC CGGTTTCGTC
GTGAACAAGT TCCGTGGCGA CGACACGCTT CTCGCGCCTG GCCTGCGGCG ATTGGAGGAG
CTCACCGGTC GTCGCGTCTA CGGAACGGTG CCGTGGAGCC CCGATGTGTG GCTCGACTCC
GAGGACACCC TCGGCCTCGC GGGCCGTTCG CCGGCGGAGG AAGGCGCGTT GCGGGTCGTC
GTCATCCGGC TGCCCCGCAT CAGCAACGTC ACCGACCTCG ACGCCCTCGG ACTGGAGCCG
GGCGTCGAGG TGGTCTTCAC CGCCGATCCG TACGACCTCG CCGACGCCGA TCTGGTGGTC
CTGCCCGGTA CCCGCGCCAC CGTCGCCGAT CTGGCGTGGC TGCGGTCCCG GGGGTTGGAC
CGGGCCGTGG TGCGTCACGC CGAGGCCGGA CGGGCCGTAT TGGGCATTTG CGGTGGTTTC
CAGATGCTCG GCCGTCACGT GCACGATCCG GAAGGCGTCG AAGCCTCCGG ACCGGTGAGT
GTGCCCGGTC TGGGCCTGTT GCCGGTGGAG ACCACGTTCT CACCGGACAA GACGCTGCGG
CGTTCGCGTG GCACGGCGTT CGGCGTCGAG GCGTTCGGCT ACGAGATCCA CCACGGTCGC
ATCACACGTG ATGTGGGCGT CGAGGAGTTC CTGGGCGGGG CTCGGGTCGG TAGGGTGCTG
GGCACGATGT GGCACGGGAG CCTGGAGTCG GATGCGCTGC GCACGGCCGT GCTGAACTTC
GCCGCCGAGG CGCGTGGCCG TTCGTTCGCC GCGTCGGGGG TCGATTTCGC GCGCAGTCGT
GAGGCCCGGC TCGACCTCCT CGGTGATCTG GTCGAACGGC ACCTCGACGT TGACGCCCTG
CTGGCTCTCG CCCAGCACGG ACCCGGACAC GTCCCGACGA TCGGACCGCA CGCATGA
|
|---|
| Protein sequence | MEAHRGRTAR LLVAGTTSDA GKTLVATGLC RAFARRGLKV APFKAQNMSN NSMVCADGAE
IGRAQWVQAL AAGVEPEAAM NPVLLKPGGD RRSHVVVLGR PAGELGSAEF PEGRAHLADA
AYAAYRDLSS RFDLVVCEGA GSPAEINLRA GDYVNMGLAR HDDIPTVLVG DIDRGGVFAA
FYGTVALLEP ADQALIAGFV VNKFRGDDTL LAPGLRRLEE LTGRRVYGTV PWSPDVWLDS
EDTLGLAGRS PAEEGALRVV VIRLPRISNV TDLDALGLEP GVEVVFTADP YDLADADLVV
LPGTRATVAD LAWLRSRGLD RAVVRHAEAG RAVLGICGGF QMLGRHVHDP EGVEASGPVS
VPGLGLLPVE TTFSPDKTLR RSRGTAFGVE AFGYEIHHGR ITRDVGVEEF LGGARVGRVL
GTMWHGSLES DALRTAVLNF AAEARGRSFA ASGVDFARSR EARLDLLGDL VERHLDVDAL
LALAQHGPGH VPTIGPHA
|
|---|
| |