Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_17310 |
Symbol | |
ID | 8387060 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 1788057 |
End bp | 1788782 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644975804 |
Product | CRISPR-associated protein, Cse3 family |
Protein accession | YP_003133586 |
Protein GI | 257055754 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01907] CRISPR system CASCADE complex protein CasE/Cse3 |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTTTTC TCTCCCGAAT CCGCATCAAC CCTTTCCGCC AAAAAAGCCG AGAACTACTC GCCAACCCGC ACAAAACACA CGGCGCCGTA CTGGCCGGGC TGCCCGACCC CGAAGCCGAA CGCCCGCTGT GGCGCTGGGA CACCGGGCGG GAGCGCAGAC CGTATCTGCT CGTGCTCACC CACACCGTTG CGGATTGGAC TCACCTTGTC GAACAGTGCG GTTGGCCCGC AGCCGACGGC GACCACGTCA TCACACGCGA CTACACGCCA CTGATACGCC AGCTCGGCGA GGGCCGCGAA TTCGCCTTCC GGGTCACCGC AAACCCCGTC CAGAACGTTC CCGCTCCCGC CCAGGAATCG ACACCGGAGC CCTCGGCGAA GCCCGGCCGC GCCGTCCGTA AGGGGCACCG CACAGCCGCG CATCAACAAC GCTGGTTCCT CGAACGTGCC GAGCGATGGG GATTCCAGGT TCCCCCGGCG CTGCTCGACG ATCCCGAAGC CGACGACGTG CCCGACATGC GGATCACCCA ACGACAGCGA CTGTCCTTCG CGAAGAGGAA AGGCGGGAAA CCGGTCATCC TGACCACCGC GACGTTCGAA GGGCGGCTGC GGATCACCGA CTCGGAGCTG TTCACCCGAA CACTGCTCCG AGGGCTCGGC CCCGCGAAGG CCTACGGTTG TGGTCTGCTC ACGCTCGCTC CCCTCCCGGT GACCGCGCGG GGGTGA
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Protein sequence | MPFLSRIRIN PFRQKSRELL ANPHKTHGAV LAGLPDPEAE RPLWRWDTGR ERRPYLLVLT HTVADWTHLV EQCGWPAADG DHVITRDYTP LIRQLGEGRE FAFRVTANPV QNVPAPAQES TPEPSAKPGR AVRKGHRTAA HQQRWFLERA ERWGFQVPPA LLDDPEADDV PDMRITQRQR LSFAKRKGGK PVILTTATFE GRLRITDSEL FTRTLLRGLG PAKAYGCGLL TLAPLPVTAR G
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