| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_16390 |
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| Symbol | |
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| ID | 8386971 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 1685548 |
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| End bp | 1687413 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644975715 |
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| Product | PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein |
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| Protein accession | YP_003133499 |
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| Protein GI | 257055667 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.240021 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.462856 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCAGGAGC CTGGTGACAC ACCAGGGCCA GCTGGCATCG CGCGTCGCTG GGCGGCGCGT
CTGGCCGAGG CCGAGGGAGC CAAACTTCCC GCGGAGACCC TGGAGTCCGT ACTGCTCGCG
GTCGCGCAGG AGGCACAGGC CGAGGCGCAG GCGGAGCGGG ACGCCGCCGC TCGTCGTTTC
ATCGACCTCT ACGCCGCCGC GCCGATCGGC GTGGTGCTCG GGGACGCCGA CGGCACCATC
CGCGACGTCA ACCCCGCGTT CGTCCAGTTG CTCGAGTACA CCCGCTCCGA CCTCATCGGA
CAACCCCTCA CCTCACTTGC CGCCACGCCG AGCGACGCGA AGGCACTCGC GGCAGCCCTG
GCCGAGATCA CGCTGCCGGG GCGACGACCG CGTCAGGAAC GACTCACGGT CATCCACGCG
AAGGACGGCA CACTCCGCGC CCGCGTGACC GTCGCCACCG TCGAAGGCGG GCCCGACGGC
ATGCCCCACC CCGTGCTGAT GCTCGAAGAC ATCAACGAGC TCGACCTGCT CGGTGAGACC
CTGCGCAGAC AGAACGTGCA GGATCCACTC ACGGGCTTGC CGAACGCGTA TCACTTCGAG
AGCAAACTCG ACATGATGCT CGCCGGGACC ACCGGGGAAC GCATCGCCCT GATCTACCTC
GACATCGACG GCTTCCGCGT CATCAACGAC GGACTCGGCC CCGGCGCGGG CGACGAGGTG
TTGCGACAGG TCGCCCGCAA GCTGGAGGCC CAGTTCATGC CCCATGACGC GGTGGTGGCG
CGGCTCTCCG GCGACGGCTT CGCGGTCCTG CTCCGAGGCG AGTTCGACAA CACCAACGTG
GTCGACCTCG TCGAGGACAC GATGCGTGAA CTGGCCGAAC CGGTCTACGT GGAGGGCAAA
GGCATCGGTG TCAACGTCAG TGTCGGCATC GTGGTCACCG AGGCCGCCGG CCACACCCGT
GAGGAGCTGC ATCGCGCGGC CGAGATCACG CTGCACCGGG CCAAGGAGAA CGGCAAGGCC
CAATGGATGT TCTTCGAACG GGAGCTGCAC GACCGGGACC GGCGACGTTA CAGCATCGGT
GCCGCGATCG GCGGTGGTCT GGAGAACGGC CAGTTCGAGG TCGACTACGA ACCGACCGTC
AAGCTCGACG GCAGCAACCA GATCGCGGTG GTCAACGCCG TGTTGCGCTG GAACCATCCC
GACTACGGTC TTTTGCGTCC CGCCGACTTC TCCGCGCTGG CCGACGTCAC GGGCATGACC
CCGGCACTGG GGCAGCTGGT GCTCACCCAG TCCATGGCCG ATGCCGCCGT ATGGCACCAG
GAGTTCACCA ACGCACCCGA CCTGTGCGTG CGGTTGCCCA CCCGCTTCGC CATCGACCCG
AATCTGGTGT GCATCGTCCG TACCGAGCTG GAACGCACCG GGCTACCGCC GAACAAACTC
CGGATCTGCA CCGACAGCAT CGCGCTCACC GACCCGCGGG GCGAGGTGCT GGAGACGTTG
TCGGTGCTCG CCGAGCTCAA CGTCAAGATC ACCCTGGCGG TGTCCGGCGC AGCCGACCTC
GAGCTGATCC ACCAGCATCG ACTGCCCGTC GGATTCCTCA TCGTCTCGGG TTCGCTGATC
GACGCACTCG CCGAGGACGA CGACAGTGGT CACAGCGCCC ACCGGCACCT TTCCATGTTG
TTGAGTCGGG CCCGCGAACT CGGCATCACC CGCGTCGGTG CCGACGGGGT GCACAGCACC
GAACACGCAC GCCGGCTCGC CGAACTCGGC ATCATCGCGG GGCGCGGCAA ACTGTTCGGC
GAGGAAGTCG GCGCAGCCGA GGTCCGCTCG ATGCTCGCGG GAGCGAAGGA ACAAGGACGA
TCATGA
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| Protein sequence | MQEPGDTPGP AGIARRWAAR LAEAEGAKLP AETLESVLLA VAQEAQAEAQ AERDAAARRF
IDLYAAAPIG VVLGDADGTI RDVNPAFVQL LEYTRSDLIG QPLTSLAATP SDAKALAAAL
AEITLPGRRP RQERLTVIHA KDGTLRARVT VATVEGGPDG MPHPVLMLED INELDLLGET
LRRQNVQDPL TGLPNAYHFE SKLDMMLAGT TGERIALIYL DIDGFRVIND GLGPGAGDEV
LRQVARKLEA QFMPHDAVVA RLSGDGFAVL LRGEFDNTNV VDLVEDTMRE LAEPVYVEGK
GIGVNVSVGI VVTEAAGHTR EELHRAAEIT LHRAKENGKA QWMFFERELH DRDRRRYSIG
AAIGGGLENG QFEVDYEPTV KLDGSNQIAV VNAVLRWNHP DYGLLRPADF SALADVTGMT
PALGQLVLTQ SMADAAVWHQ EFTNAPDLCV RLPTRFAIDP NLVCIVRTEL ERTGLPPNKL
RICTDSIALT DPRGEVLETL SVLAELNVKI TLAVSGAADL ELIHQHRLPV GFLIVSGSLI
DALAEDDDSG HSAHRHLSML LSRARELGIT RVGADGVHST EHARRLAELG IIAGRGKLFG
EEVGAAEVRS MLAGAKEQGR S
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