Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_15980 |
Symbol | |
ID | 8386931 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 1640623 |
End bp | 1642722 |
Gene Length | 2100 bp |
Protein Length | 699 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644975676 |
Product | transketolase |
Protein accession | YP_003133460 |
Protein GI | 257055628 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0021] Transketolase |
TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0310968 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCGGAGA TTGCCGCTAC GGAGAACAAC CCACTGTTGC GTCGGAACTA CCCGGCCGAC TGGACGGATC TGGACACCCG CGCGGTGGAC ACGATCCGCG TGCTGGCGGC CGACGCCGTC GAACACTGTG GCAGCGGACA CCCCGGCACA GCCATGAGCT TGGCGCCGGT GGCGTACTCC TTGTTCCAGC GCATCATGCG CCATGACCCC GCGGATCCGG AGTGGCCGGC CCGGGACCGG TTCATCCTCT CGGCCGGACA CAGCAGCCTC ACGCTGTACC TCCAGCTGTT CCTCGCCGGC TACGGCCTGG AGATGGAGGA CATCAAGCAG CTTCGTAAGT GGGGGTCGAA GACACCCGGC CACCCGGAGT ACCGCCACAC CCCGGGTGTG GAGACCACGA CGGGACCGCT GGGTCAGGGG TTGGCCAACG CCGTGGGTAT GGCCATGGCG GCCCGCCGGG AGCGTGGGCT GCTCGACCCG GACACCCCGC AGGGGGAAAG CCCGTTCGAC CACCACATCT ACGTGATCGC CTCCGACGGT GACATCCAGG AGGGCGTGAC GGCCGAGGCG TCGTCTTTGG CGGGCCGGCA GGAACTCGGC AATCTGATCG TCATCTACGA CGACAACAAG ATCTCCATCG AGGACGACAC CAACATCGCC TTCTCCGAGG ACACCGCCAA GCGTTACGAG GCGTACGGCT GGCACGTCCA GGTCGTCGAG GGCGGCGAGG ACGTCGCGGC CTTCGAGCAG GCCATCGAGG CCGCGAAGGC CGAGACCACC CGGCCGTCGT TCATCGTGCT GCGCACCGTG ATCGGCTATC CAGCGCCGAA CAAGATGAAC ACCGGTAAGG CCCACGGCGC TGCGCTCGGC GCCGACGAGG TGGCCGCCGT CAAGGAGATC CTCGGCTTCG ACCCCAAGGT CAGCTTCCAC ATCGACGACG AGGTGCTCGC CCACACCCGC AAGGTGAAGG AGCGTGCACG TGCCGCTCGC GAGCAGTGGC AGCAGGCCTT CGACGCCTGG GCGCAGGCCA ACCCGGAGCG GAAGGAGCTC GCCGACCGGC TCCGGACCCG CTCGCTTCCC GAGGGGTGGG CCGAGAAGCT CCCGAGCTGG GAACCCGACC CGAAGGGTCT TGCGACCCGG AAGGCGTCCG GGGAGGTCCT CAACGCCATC GGCGATGCGC TGCCCGAACT GTGGGGTGGC TCCGCCGACC TGGCCGAGAG CAACAACACC CTCATCAAGA ACTCGGACTC GTTCGGCCCC GAAAGCGCCT CCACCGACAT GTTCACCGCC CACCCCTACG GCAGGAACCT GCACTTCGGG GTGCGTGAAC ACGCGATGGG CGCGATCCTC AACGGCATCG CCCTCCACGG AGGCACCCGC CCCTACGGCG CCACGTTCCT CATCTTCAGC GACTACATGC GGCCTTCCGT CCGCCTCGCG GCGCTGATGA AGGCCCCCGT GATCTACGTG TGGACGCACG ATTCGATCGG CCTCGGTGAG GACGGGCCCA CCCACCAGCC GGTCGAACAG TTGGCCTCGC TGCGCGCGAT CCCCGGTCTG AACGTCGTTC GCCCCGCCGA CGCCAACGAA ACGGCCGCGG CGTGGAAGGC GGCGCTGGAG GACGTCCACA ACCCCACGGG CCTGGCACTG ACCCGACAGA ACGTGCCGGT GCTGGAGGGC ACCAGCGCCG AAGGCGTCGC CAAGGGCGGC TACGTGCTGG CCGAGGCCTC CAACGGCTCC CCCGAGGTCG TGCTGATCGC CACGGGCTCG GAGGTGCAGC TCGCGGTGGA GGCCCGCAAG GTGCTCGAAG CCGAGGGAGT GCCCGCCAGC GTGGTGTCGA TGCCGTGCGT GGAGTGGTTC GACCGGCAGG ACCAGGAGTA CCGCGACGCG GTTCTCCCCC CGACCGTCAA GGCCCGCGTC ATCGTCGAGG CCGGGACGGC CCAGCCGTGG TACCGGTTCG CGGGCGAGGC GGGCGAGATC ATCTCGATCG AGCAGTTCGG CGCCTCGGCG GACTACAACA CGTTGTTCGA GAAGTTCGGG TTCACCACCG AAGCCGTGGT GGAGGCCGCC CGTCGGTCGC TGGCGAAGGC GAAGAGCTGA
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Protein sequence | MSEIAATENN PLLRRNYPAD WTDLDTRAVD TIRVLAADAV EHCGSGHPGT AMSLAPVAYS LFQRIMRHDP ADPEWPARDR FILSAGHSSL TLYLQLFLAG YGLEMEDIKQ LRKWGSKTPG HPEYRHTPGV ETTTGPLGQG LANAVGMAMA ARRERGLLDP DTPQGESPFD HHIYVIASDG DIQEGVTAEA SSLAGRQELG NLIVIYDDNK ISIEDDTNIA FSEDTAKRYE AYGWHVQVVE GGEDVAAFEQ AIEAAKAETT RPSFIVLRTV IGYPAPNKMN TGKAHGAALG ADEVAAVKEI LGFDPKVSFH IDDEVLAHTR KVKERARAAR EQWQQAFDAW AQANPERKEL ADRLRTRSLP EGWAEKLPSW EPDPKGLATR KASGEVLNAI GDALPELWGG SADLAESNNT LIKNSDSFGP ESASTDMFTA HPYGRNLHFG VREHAMGAIL NGIALHGGTR PYGATFLIFS DYMRPSVRLA ALMKAPVIYV WTHDSIGLGE DGPTHQPVEQ LASLRAIPGL NVVRPADANE TAAAWKAALE DVHNPTGLAL TRQNVPVLEG TSAEGVAKGG YVLAEASNGS PEVVLIATGS EVQLAVEARK VLEAEGVPAS VVSMPCVEWF DRQDQEYRDA VLPPTVKARV IVEAGTAQPW YRFAGEAGEI ISIEQFGASA DYNTLFEKFG FTTEAVVEAA RRSLAKAKS
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