| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_13870 |
|---|
| Symbol | |
|---|
| ID | 8386722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 1430835 |
|---|
| End bp | 1432289 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644975470 |
|---|
| Product | CRISPR-associated protein, Cse1 family |
|---|
| Protein accession | YP_003133259 |
|---|
| Protein GI | 257055427 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02547] CRISPR system CASCADE complex protein CasA/Cse1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.578004 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.601258 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCAACA TCGCCACCGA CCCGGTCATC CCGGTGACAC GATCCGACGG CACCACCACC
CGCCTCGGCC TACGTGACCT TCTCGTCCAC GCCCACAAGA TCCGCCACTT GGATATCCCC
ATCCCCCCAG CCGAGGCCGG GCTCCTGCGG ATCCTGTACA CGATCACCTG CCGTATCACC
GGCCTCGACA CCCACGACAA CCGCAACACA TGGGCGGAGC ATCGCAACAC GGTCCTCGCC
ACTGGGCGGT TCGACGCGGA CGCCATTAAC GCCTACCTCG GCAAGCACTG CTGGGACCTG
TTCGACGAAC AACGACCGTG GATGCAAGAT CCCCGACTCC CTGACCAAGC GGAACGCAAG
ACCGCAAACG TCCTCGACAT GACCAGGCCC GGAGACAACT CCGCGATCTG GTGGAAGCAC
ACCCACGCCG ACTACGCCCC ACCCTTGCCC GCACACGAAG CTGTGCAATG GCTGATCGTG
CACCACTACT ACGGGTCCGG AGGCGCTGGC GGGAAACGCA CCGTCACACA CAACAACAAG
ACAGTGTCGG ACCAGTACAT GTCCTCCGGC CCGTTGCGGT CCACCGTCAC CTACTACCCA
CTCGGCGCGA CACTGTTCGA AACCCTGCTC GCAGGCATCC CCGCACCCTC ACACACCACC
ACAGGCGACG CCGCGCCATG GGAAACCGAC CTCAACCAGC CACTCGGCAC CCCACCCGCC
CCCACGTGGC CCGCCGGGAT TCTCACCGGC CAATCCCGAC ACGCGCTCCT GCTCGACCAC
ACCGACAACG AGGTCGACGG CGTCTACCTG ACGTGGGCGT GGAAAGAACG CCACACCCCG
ATCCTGGATC CGTATTGCAT TCACAACATC GACCCCAAAA CCGGCGAAGC CCAGCCACGC
CAAGCGAACA CCTCCCGCTC GGCGTGGCGG GACTTCGACG CGCTGCTGGC CGACCGTCCC
ACTCACACCC GTCCCGCCGT GCTGGGGGAT GCGCTCGACC TTCCCGACGA TCTCCAAGAC
ACCCTGCGGG TTCGGGCGAT CGGCTGGCAC CAGGACCGAC AGGCCACCAA CACCGGCTGG
TATGTCTCCG AAACTCCGCC ACTGCTGCGG TACATGGATG AGCACGACCC CGCCCGCGCG
GCGCTAGCTG AAACCCTCGT CACCACAGCC GACAAGGTTT ACGGGGCGAT GCGCAAAGCG
CTCCACAAGG CGTGGAAGGA CGCCGACCTC GGCGATCCCA AACAGTGCCC GTGGAAGGAC
GCCGCTGATC ACCTGTACTG GCCCGCCGCT GAACACATCT TCTGGGCACA CCTTGATGCC
AACACCCCAC CAGAGCGGGA GTTCGTGGAC ACCGCTGTGC GTGTCATCGA CACCGTCACC
GCCCCACATG CCGACCGCCT CTTGGTCGCT CGCGAAACCG CCCGAGCCAT CCGCACAGTG
AGAGGAATCA AATGA
|
|---|
| Protein sequence | MTNIATDPVI PVTRSDGTTT RLGLRDLLVH AHKIRHLDIP IPPAEAGLLR ILYTITCRIT
GLDTHDNRNT WAEHRNTVLA TGRFDADAIN AYLGKHCWDL FDEQRPWMQD PRLPDQAERK
TANVLDMTRP GDNSAIWWKH THADYAPPLP AHEAVQWLIV HHYYGSGGAG GKRTVTHNNK
TVSDQYMSSG PLRSTVTYYP LGATLFETLL AGIPAPSHTT TGDAAPWETD LNQPLGTPPA
PTWPAGILTG QSRHALLLDH TDNEVDGVYL TWAWKERHTP ILDPYCIHNI DPKTGEAQPR
QANTSRSAWR DFDALLADRP THTRPAVLGD ALDLPDDLQD TLRVRAIGWH QDRQATNTGW
YVSETPPLLR YMDEHDPARA ALAETLVTTA DKVYGAMRKA LHKAWKDADL GDPKQCPWKD
AADHLYWPAA EHIFWAHLDA NTPPEREFVD TAVRVIDTVT APHADRLLVA RETARAIRTV
RGIK
|
|---|
| |