Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_06080 |
Symbol | |
ID | 8385946 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 622598 |
End bp | 624214 |
Gene Length | 1617 bp |
Protein Length | 538 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644974705 |
Product | cell envelope-related function transcriptional attenuator common domain protein |
Protein accession | YP_003132506 |
Protein GI | 257054674 |
COG category | [K] Transcription |
COG ID | [COG1316] Transcriptional regulator |
TIGRFAM ID | [TIGR00350] cell envelope-related function transcriptional attenuator common domain |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.832186 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.188153 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCGACG GGGCACGGGA ACCGCTCGAC ACGCCAGTCA TACGAAGCAA GTCCCGGCTT CGCACCATCG GCCTCATCGG CGGCAGAACC CTCGTGTCCT TGCTGTCCGT CGTGGTGTTG GCACTCACTG CCTACGGCTG GCAGATGATC GGGACCGCAC AGTCGAACCT CGCCACGACC GACGTGTTCG ACGACCAGGA GCCCGGAGCG AAACCGCTGG ACGGCTCCGT CGACATCCTC CTCGTCGGCA TCGACAGTCG CACCGACGCG CAGGGCAACC CCCTGCCGCA GGAAGTGCTC GACATGCTCC ACGCCGGCAA GGACGAGGGA ACCAAACAGA CCGACACGAT GATCCTGGTG CACATCCCCC AGGACGGCAC CAGCGCCACC GCCATCTCCT TCCCCCGGGA CTCCTGGGTG GAGCTGGCGG GCGGCTACGG GACCAACCGG CTCAACACCG CGTTCCGCTT CGCCTACAAC CACACCCGCA ACACCCTGCT CGCCCAGGGG GAGACCGACA CCGAGGCGAT CGAGAAGCAG GCCGAGGCCG AGGGGCGCAA GAACCTCATC GCCACCATCG AACAGCTCAT CGGCCGGCCC GGCATGATCG ACCGGTACGC CGAGGTGAAC CTGGCGAGTT TCTACGAGAT CACCAAAGCC ATCGGCGGCA TCGAGGTCTG CCTGAAACAA CCCGCGAAGG AAGCCAAGTC CGGCATCAAC CTCCCCGCAG GAAGGCAGAC CATCGAAGGG GTGCAGGCGC TGGCGTTCGT GCGACAGCGC ACCGGACTCC CCCGCGGTGA CCTGGACCGG ATCAACCGGC AGCAGGCGTT CTTGTCCGGC CTCGCCCGCA AGATGCTCTC CAAGGAGATC CTGCTGAACC CGTCACGCCT GTCCGAGGTG ATCTCGGCCG TGCAGAAGTC GGTGGTCGTC TCCAAGGACT GGGACCTGCT GGAGTTCGCC CATCAGATGC GCAACCTCTC CGGTGGGCAG ATCGAGTTCC ACACGGTCCC CGTGGTGCAG GACATGTACG TCAACGGCGC GTCCGTGCTG GAGGTGGACC CCGCGCAGAT CAGGGCTTTC ATCGACGAAT TGGTCCCGAG GGAGACCGAA GGCGATCCGC GCATGGACTC GGTGCCGCAG ACGGTGCCGG GCGCGGAGGC CTACACGGTG CACATCTACA ACGCCACGGC GGACCCCTCC CTGGGTGAGG CCACGCGAAC GCTGTTGGCG AGTCAGGGTT TCGGCGGGGA AAGTTACGCA CAATCAGACC CGCAGAACTC CACGGTGATC TACCATGCTC CGGGCGAGCA AGCCGGTGTC GACGCGCTGC GTACGGCTTT GGGCGTGGAC TTCGCCGCCC AGGCCGACCC ACAGCTGGCC CCCGGAACGC TCAACCTGTA CCTCGGCGGG GACTTCACGT TGCCCCCCAC GACCCAGGGC GCGGAAGGGC TCACCGGGGT TCAGCCGCTG CGGACCGGGA GTGTGGGGTA TCGGGCGCAA CAACAGTCGG ACACCGGGCA GAGCGCTCCG GAGTCCGGGG AACCCGGTAC GGACGAGGGA TCGGAGGACG CCGAGGACGG ACCGATCACC GCTGGTGGAG TGCCGTGCAT CTACTAG
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Protein sequence | MTDGAREPLD TPVIRSKSRL RTIGLIGGRT LVSLLSVVVL ALTAYGWQMI GTAQSNLATT DVFDDQEPGA KPLDGSVDIL LVGIDSRTDA QGNPLPQEVL DMLHAGKDEG TKQTDTMILV HIPQDGTSAT AISFPRDSWV ELAGGYGTNR LNTAFRFAYN HTRNTLLAQG ETDTEAIEKQ AEAEGRKNLI ATIEQLIGRP GMIDRYAEVN LASFYEITKA IGGIEVCLKQ PAKEAKSGIN LPAGRQTIEG VQALAFVRQR TGLPRGDLDR INRQQAFLSG LARKMLSKEI LLNPSRLSEV ISAVQKSVVV SKDWDLLEFA HQMRNLSGGQ IEFHTVPVVQ DMYVNGASVL EVDPAQIRAF IDELVPRETE GDPRMDSVPQ TVPGAEAYTV HIYNATADPS LGEATRTLLA SQGFGGESYA QSDPQNSTVI YHAPGEQAGV DALRTALGVD FAAQADPQLA PGTLNLYLGG DFTLPPTTQG AEGLTGVQPL RTGSVGYRAQ QQSDTGQSAP ESGEPGTDEG SEDAEDGPIT AGGVPCIY
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