Gene Svir_03110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_03110 
Symbol 
ID8385649 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp305886 
End bp307565 
Gene Length1680 bp 
Protein Length559 aa 
Translation table11 
GC content71% 
IMG OID644974411 
Product2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 
Protein accessionYP_003132219 
Protein GI257054387 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 
TIGRFAM ID[TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACCCCT CCACGGCACA AGCTCGGGTC CTGGTGGACG AGCTCGTCCG CAACACCGTC 
TCCCACGTGG TGCTGAGCCC CGGCTCCCGT AACGCGCCGC TGTCCTTCGC GCTGCACGAC
GCCGCGATGG CCGGCAGGCT CACGCTGCAC GTGCGCATCG ATGAGCGCAG CGCCGCGTTC
CTCGCTCTCG GTATCGCCGC GCGTACGGGC CGTCCCGTGG CCTTGGTGTG CACCTCGGGT
ACGGCGGCGG CGAATTTCCA CCCCGCCGTG CTGGAGGCGG ACAGGGCGGG GGTGCCGCTG
ATCGTGTTGA CGGCCGACCG GCCTCCCGAA CTGCGGGCCG CCGGGGCGAA CCAGGTGATC
GACCAGCGTG GGCTCTACGG ACCTGCCGTC CGCTATTTCG ACGAACTGGC CGTGGCCGAA
CGCAGGCCGG GACAGAACGC GTACTGGCGC AGTCAGATCT GCCGGGCGTG GAACGCCGCC
TACGGGGAGT GGCGGTGTGG TCCCGTGCAC CTCAACATCC CGTTCCGGGA GCCGCTCGTA
CCCGACGGAA AGGACGATCC CGACGACTGG CCCGAACCAC TCGACGGCAG ACCGCAGGGT
GCACGGTGGA CGGAGTTGCC GGACTTCGGC GCGTTGCCGT CGTCCGTGGT GCCCTCGGCT
CGCCACGGTC TGGTGGTGGC GTGCGACGCG GGGGTGCGGG CCGCGGGTGA GTGGGCGGAG
TTGCACGGTT GGCCCGTGGT GTCGGAGACG GGGGGTCTCG GACTGGGCGG GACGACGGCG
ATCGCGGGCG GCGTGTGGTT GCTGGGGGTG GAGGAGTTCC TGGCCGAACA CAAGCCGGAA
CAGGTGTTGT GCATCGGCAG GCCCACGGTG TTCCGGCAGG TGCAGCGGCT GCTGTCCGAT
CCGGACATCG AGGTGCTGCT GGTGCGTCCC GACTCCGACT GGCCCGCCCC GGCGCACAAC
GTCCGGCAGG TGGGCCAGTG GTTCGACGAA CCGGCGAAAC CGGCCGATCC GGAGTGGTTG
TCTCGGTGGC GGGAGGCGGA CGCGGCGGCC GTCGCGGCGG TACGGGAGAC GCTCGCCGAG
CAGCCGTGGC CCACCGGGCT GAGCGTGGCG AGCGAGCTGG TGGAGAACCT GCCTCCCGAT
TCGCTGTTGG TGGTCGGTTC GTCGAATCCC ACGCGTGACG TCGCGCTCGT CGGCGGCCGT
CGCCCCGATG TGTTGGTGCA CCGCAACCGC GGGGTCGCCG GCATCGACGG CACGATCTCC
ACCGCCGTGG GCGCGGCCCT GGTGCATTCG GGGCCGGCGT ACGCACTCGT GGGGGATCTG
ACGTTCCTAC ACGACGTGAA CGGCCTGCTC GCGGGTCCCA CCGAGAGCAG GCCCGACTTG
ACGATCGTGG TGCTCAACGA CGACGGCGGC GGCATCTTCT CGCTGTTGGA ACAGGGGGAG
GAACAGCACA GCGCACGGTT CGAACGGGTT TTCGGCACCC CGCACGGTGC GGACCTGTCG
GCGTTGTGCG CGGGCTACGG CGTGCCGTAC ACGTTGGCGT CCTCGCGCGA GGTGTTGCGG
GAGGCGTTGC GGCCCGCGCC CGGTCTGCGG GTCGTCGAGG TGAGGGTCGA CCGGTCCCGA
CACCGCGAGC TGCACGCCCT GCTGCGGGGG GCCGTGGCGA AGGCGATCGA CACCCGTTAG
 
Protein sequence
MNPSTAQARV LVDELVRNTV SHVVLSPGSR NAPLSFALHD AAMAGRLTLH VRIDERSAAF 
LALGIAARTG RPVALVCTSG TAAANFHPAV LEADRAGVPL IVLTADRPPE LRAAGANQVI
DQRGLYGPAV RYFDELAVAE RRPGQNAYWR SQICRAWNAA YGEWRCGPVH LNIPFREPLV
PDGKDDPDDW PEPLDGRPQG ARWTELPDFG ALPSSVVPSA RHGLVVACDA GVRAAGEWAE
LHGWPVVSET GGLGLGGTTA IAGGVWLLGV EEFLAEHKPE QVLCIGRPTV FRQVQRLLSD
PDIEVLLVRP DSDWPAPAHN VRQVGQWFDE PAKPADPEWL SRWREADAAA VAAVRETLAE
QPWPTGLSVA SELVENLPPD SLLVVGSSNP TRDVALVGGR RPDVLVHRNR GVAGIDGTIS
TAVGAALVHS GPAYALVGDL TFLHDVNGLL AGPTESRPDL TIVVLNDDGG GIFSLLEQGE
EQHSARFERV FGTPHGADLS ALCAGYGVPY TLASSREVLR EALRPAPGLR VVEVRVDRSR
HRELHALLRG AVAKAIDTR