Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_01040 |
Symbol | |
ID | 8385442 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 104647 |
End bp | 105279 |
Gene Length | 633 bp |
Protein Length | 210 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 644974208 |
Product | transcriptional regulator |
Protein accession | YP_003132019 |
Protein GI | 257054187 |
COG category | [K] Transcription |
COG ID | [COG1414] Transcriptional regulator |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.0791701 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGACCAGGG AGAGCTCGCT GACGCTGGAT CGCGGGCTCG CACTGCTGCA GGCCGTGGCC GACGCGGGGG AGGCGTCGGC CACGGTGACG GACCTGGCCG CGGCGATCGG CACCAGTAGG GCCGCCGTGT ACCGCCTGTT GGTGCCCCTG GCCGAACGCG GGCTGGTGTG GCGGGACGGC AGTCGCGTCC GACTCGGCTC GGGAGTGCTC CGGCTGGCCG AGCAGATGCT GCCGCAACTG CGGGCCGCGG CCCGGCCGGT GCTGCGCGAC CTGGCCGACA CCGTGGGCGC GACGGCGCAC CTGTCGGTGG TCGAGGGCGA CCAGGTCCAT GTCGTCGCGG TGGCGGAACC GCTGCGGACG ACGTTCCACG TGGCGTACCG GTTGGGCAGT AGGCACCCGG TGTCGCGGGG TGCCGTCGGC AAGGCCCTCG CGCTACGGCC GCGGGGCAAG GGGTGGGCCG CCGTCACGGG TGATCCGCAA CCCGGCATCT ACGGTGTCGC GGCACCCGTG CGAGGTGTGG TCGGGGTCAG GGCGGCGCTG GGCGTGGTGT CGTTCACGGC CCTGGACAAC TCGGTGGTCG GTCCTCGGCT CGTGGAGGCG GCGAACACCC TCGTCGAGAC GTTGCGCGCT TGA
|
Protein sequence | MTRESSLTLD RGLALLQAVA DAGEASATVT DLAAAIGTSR AAVYRLLVPL AERGLVWRDG SRVRLGSGVL RLAEQMLPQL RAAARPVLRD LADTVGATAH LSVVEGDQVH VVAVAEPLRT TFHVAYRLGS RHPVSRGAVG KALALRPRGK GWAAVTGDPQ PGIYGVAAPV RGVVGVRAAL GVVSFTALDN SVVGPRLVEA ANTLVETLRA
|
| |