Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_00590 |
Symbol | |
ID | 8385397 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 58128 |
End bp | 59906 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644974163 |
Product | choline/carnitine/betaine transport |
Protein accession | YP_003131975 |
Protein GI | 257054143 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0767816 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGGTC ATTCGGATGA AGAGGGTGAA CGTTCGAGGA CCGAGCTGGA GGACTCGGAT TCGGAAAGGA TCGTAGACCA ACCGGGGGAC ACCGATTCTC GATCCACTGC GGAAGCGAAA CACGATCCGG AGTTGACGCC TGCGCACGAG AAGCACCGTC CCCGGACCGA CCACGTGGTG TTCGGGGTGT CGGCGATCAT CGCGTTGGCG ATCGTGGCGT GGGGTATCGC CTCGCCCGGC AGCCTCGCCG TCGTCGCGGA CACACTCCTC AACGACGTCG TCATCCCGTA CGGGGGTTGG GCCTTCGTCC TCACCGCGAG CGGCTTCGTG CTCTTCGCCA TCGGGGTGGC GATCAGCAGG TACGGCCGTA TCCCCCTGGG ACGGGACGAC GAGCAGCCGG AGTTCCGGAC GGTCTCGTGG ATCGCGATGA TGTTCAGCGC GGGCATGGGT ATCGGACTCA TGTTCTTCGG TGTCTACGAG CCCGTGGCGC ACTTCGTCGA ACCACCCCCC GGCACGGTGC CGGGCAACTC CGATCAGGCC GTGCACACGG CGATGGCGAC CACGCTCTTC CACTGGACGG TGCATCCGTG GTCGATCTAC GCCGTCGTCG GCCTGGCCAT CGCCTACAGC GCGTTCCGCA AGGGGCGAAG CCAGCTCATC TCGGCCGTGT TCGCACCTCT GATCGGCACA CGGCGCAGCG AGGGGCCGTT GGGCAAGGCC ATCGACATCA TGGCGATCTT CGCGACGCTG TTCGGCTCGG CCGCCTCGCT CGGGCTCGGT GCTCTGCAGG TCGGCGGTGG GCTGGCCGCG GTGGGTTGGG CCGAAAAGCC CGGAACCGGC CTGCTGGTCG GGATCATCGC GGTGCTCACG GTCGCGTTCG TGGCCTCCGC CGTGTCCGGT ATCGCGCGGG GGATTCAGTG GCTGTCGAAC ATCAACATGG TGCTCGCCGC CCTGCTCGCC GTGTTCCTCC TGGTGGTGGG GCCGACGGTG CTGATCCTCA ACATGGTGCC CGGTGCCCTC GGCGATTACC TGCACGATCT GTCCGCCATG GCGGGACGGA CCGGTGCGAC CGGTGGCGAG GAGATGCGGG AGTGGCTGGG CAGCTGGACC GTCTTCTACT GGGCGTGGTG GATTTCGTGG GCGCCCTTCG TCGGCATGTT CATCGCGCGG ATCTCCCGGG GTCGCACGAT CCGGGAGTTC GTCATCGGTG TGATCGCCGT GCCGAGCATC GTCGGCCTGG TCTGGTTCTC GATCTTCGGT GGCGCCGCCA TCCAGTACCA GCGTTCAGGT GTGGACATCG CGGGCGCCGG TGGCGAGGAG GCGGCCACGT TCACGCTGCT GGAGAGCCTG CCGCTGTTCC TGCCGATCGC CATCATCGTG ATGGTCCTGG TGTCGATCTT CTTCGTGTCC GGGGCCGACG CGGCCTCCGT GGTGATGGGC ACGCTCTCAC AGCGGGGCTC GTCGGGGCCG CATCGTCGGG TCGTCATCTT CTGGGGAGCG GTGATGGGGG CGGTCGCGGC CGTGATGCTC CTGGTCGGCG GGGACGACGC CCTCAACGGG CTGCAGAACC TCACCATCCT CGTGTCGGTG CCGTTCGTGT TCGTCATGAT CGCGTTGTGT GTCTCGCTGT ACCGGGATCT ACGTCGTGAT CCGCTGGTGG TCAGCGAGGA CGAGGTCATG CGCTCGCTGC GGAAGCTCCA CGCCGAACGC AAGGCCGAAC GCAAGGCTGA ACGCAGGGCC GAACTGGCCA GGGTCCGTAG ACATCTGCGC AAGCGGTAG
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Protein sequence | MAGHSDEEGE RSRTELEDSD SERIVDQPGD TDSRSTAEAK HDPELTPAHE KHRPRTDHVV FGVSAIIALA IVAWGIASPG SLAVVADTLL NDVVIPYGGW AFVLTASGFV LFAIGVAISR YGRIPLGRDD EQPEFRTVSW IAMMFSAGMG IGLMFFGVYE PVAHFVEPPP GTVPGNSDQA VHTAMATTLF HWTVHPWSIY AVVGLAIAYS AFRKGRSQLI SAVFAPLIGT RRSEGPLGKA IDIMAIFATL FGSAASLGLG ALQVGGGLAA VGWAEKPGTG LLVGIIAVLT VAFVASAVSG IARGIQWLSN INMVLAALLA VFLLVVGPTV LILNMVPGAL GDYLHDLSAM AGRTGATGGE EMREWLGSWT VFYWAWWISW APFVGMFIAR ISRGRTIREF VIGVIAVPSI VGLVWFSIFG GAAIQYQRSG VDIAGAGGEE AATFTLLESL PLFLPIAIIV MVLVSIFFVS GADAASVVMG TLSQRGSSGP HRRVVIFWGA VMGAVAAVML LVGGDDALNG LQNLTILVSV PFVFVMIALC VSLYRDLRRD PLVVSEDEVM RSLRKLHAER KAERKAERRA ELARVRRHLR KR
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