Gene Strop_4328 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_4328 
Symbol 
ID5060813 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp4901819 
End bp4903843 
Gene Length2025 bp 
Protein Length674 aa 
Translation table11 
GC content75% 
IMG OID640476590 
Productcarbamoyl-phosphate synthase L chain, ATP-binding 
Protein accessionYP_001161134 
Protein GI145596837 
COG category[I] Lipid transport and metabolism 
COG ID[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00647144 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGATCAGCA GACTTCTGGT CGCCAACCGG GGCGAGATCG CTCGCCGGAT CTTCACCACC 
TGCCGGGCGC TCGGGATCGA GACGGTCGCC GTGCACTCCG ACGCGGACGC CGACGCGCCC
TTCGTCACCG AGGCTGACCA CGCTGTCCGG CTGCCCGGGA ACACGCCTGC CGAGACGTAC
CTGCGGATCG ACCTCGTCCT GGCCGCGGCC CGGCGGGCCG GCGCGGACGC CGTGCACCCG
GGCTACGGCT TCCTCGCCGA GAACGCCGAG TTCGCCACGG CGGTCACCGA CGCCGGGCTG
GCCTGGGTCG GGCCACCGGC CAAGGCGATC GCCGCGATGG GGGACAAACT GGCGGCGAAG
ACGCTGCTCG CCGAGGCCGA CGTCCCCATG CTGCCCAGTT GGACCGAGGC CGACCAGGTC
AACGGTTTCC CGGTGCTGGT CAAGGCAGCC GCCGGAGGTG GTGGGCGGGG CATGCGGGTG
GTCCGCGCCG CCGACGGTCT CACCGACGCC GTCGCCAGCG CCCGCCGCGA GGCGGCCTCC
GCGTTCGGCG ACGGCACCGT CTTCATCGAG CGGTACGTCG AACGCGGCCG CCATGTCGAG
GTGCAGATCC TGGGCGACCA GTTCGGGACG GTGCTGGCCC TTGGCGCACG GGACTGCTCG
ATCCAGCGCC GCCACCAGAA GATCGTCGAG GAGGCGCCGG GCGTGCTCGC GCCCGAGGTG
CGCCAGCGAC TCCACGAGGC GGCGGTGGCC GCCGGCCGGG CGGTCGACTA CGTCGGCGCG
GGCACGGTCG AGTTCCTGCT CGCCCCGGAC GGTGACATCT TCTTCCTGGA AATGAACACC
CGCCTTCAGG TGGAGCATCC GGTGACCGAG CTGACCACCG GCCTGGACCT GGTCCGCCTG
CAACTGCTCG TCGCCGAGGG CAACCCGCTG TCGATCGGTA CGACCCCACC GGCCACCGGG
CACGCGATCG AGGTACGCCT CTGCGCCGAG GACCCCGCCC AGGGGTACCG GCCGGCGACG
GGCACCCTGC ACCGGTTCAC GGTCCCCGGG GTGGCCACCG AGTTCGGGCC GCTGACCGGG
GCGGGCCTGC GGCTGGACTC CGGCGTGACG GACGGCTCGG TGGTGGGCAT CCACTACGAC
TCGATGCTCG CGAAGGTGAT CGCCTGGGCG CCCACCCGGG GCGAGGCGGC CCGCGCGCTG
GCCGGCGCAC TGGCCCGGGC CGAGCTGCAC GGTGTGGCCA CCAACCGGGA TCTGCTGGTA
CGCGTCCTGC GCAGCCCGGA GTTCGCCGCC GTTGACCTCG ACACCGGCTT CCTGGACCGG
CACCCCGAGG TCTTCGCGCC GCTGCTCGCC CCGGAGGAGC TTCCCGTGGC CGCGGTGGCG
GCGGCGCTCG CCTCCGCCGC CGGCCGTCGG GCTGCCGCCC CGGTGCTGGC CGGGCTCCCC
TCGGGCTGGC GCAACGTGCC CGCCTTCACG CAGGTCACCC GCTACGCCGA GCCGGACGGC
GGGGAGCTGG AGGTGCGCTA CCGCCTGGAC CGCCGCGGCG CGCTCGTCGA GTGGTCGGTG
GCATCGGGGG ACGGCTCGTC CGCCGCCGAC GACGACGCCG CGCCGGCCGG CGAGGCGCCG
GCCCTCGCTC TGCGCGAGGC CCGCCCCGAT CAGGTCGTCC TGGACGTCGC CGGGGTGCGG
CGAACATACC GGGTACACCG GGTGGGCTCG GAGATCTTCG TGGACGGCCC GGACGGCGCG
GTGGTCCTGG CCGAGCTACC GCGCTTCCCG CTGCCCGGCG CGGAGCTGGC GGCCGGGTCA
CTGCTCGCGC CGCTGCCCGG CACGGTGACC CGGGTGCAGG TCGAGCTCGG CCAACGGGTC
GCCGCCGGTG ACCTGCTGCT GACTCTGGAA GCGATGAAGC TGGAGCACCC GGTGCTCGCC
CCCACCGACG GCGTGGTCGC CGAGCTGCCG GTACCCACCG GCGGCCAGGT CGAGACCGGC
GCGGTGCTGG CCGTGGTCAA CCCCGACGAG GAGGCACAAC CATGA
 
Protein sequence
MISRLLVANR GEIARRIFTT CRALGIETVA VHSDADADAP FVTEADHAVR LPGNTPAETY 
LRIDLVLAAA RRAGADAVHP GYGFLAENAE FATAVTDAGL AWVGPPAKAI AAMGDKLAAK
TLLAEADVPM LPSWTEADQV NGFPVLVKAA AGGGGRGMRV VRAADGLTDA VASARREAAS
AFGDGTVFIE RYVERGRHVE VQILGDQFGT VLALGARDCS IQRRHQKIVE EAPGVLAPEV
RQRLHEAAVA AGRAVDYVGA GTVEFLLAPD GDIFFLEMNT RLQVEHPVTE LTTGLDLVRL
QLLVAEGNPL SIGTTPPATG HAIEVRLCAE DPAQGYRPAT GTLHRFTVPG VATEFGPLTG
AGLRLDSGVT DGSVVGIHYD SMLAKVIAWA PTRGEAARAL AGALARAELH GVATNRDLLV
RVLRSPEFAA VDLDTGFLDR HPEVFAPLLA PEELPVAAVA AALASAAGRR AAAPVLAGLP
SGWRNVPAFT QVTRYAEPDG GELEVRYRLD RRGALVEWSV ASGDGSSAAD DDAAPAGEAP
ALALREARPD QVVLDVAGVR RTYRVHRVGS EIFVDGPDGA VVLAELPRFP LPGAELAAGS
LLAPLPGTVT RVQVELGQRV AAGDLLLTLE AMKLEHPVLA PTDGVVAELP VPTGGQVETG
AVLAVVNPDE EAQP