Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_4245 |
Symbol | |
ID | 5060730 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 4812332 |
End bp | 4814038 |
Gene Length | 1707 bp |
Protein Length | 568 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640476507 |
Product | tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit |
Protein accession | YP_001161051 |
Protein GI | 145596754 |
COG category | [C] Energy production and conversion |
COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region [TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.201953 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0592114 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGGACCGG ACGGCTCTTC TGCCCTAGGC TTTCCGCTCA TGAGCAGTGC CGCCTCCTTC TCGTACGCAC CTCTGCTGCC GACCGGTTCG GACCAGACGG AGTACCGCCT GATCACTGAC GAGGGCGTTG ACGTCGTCAA CGGCCCCGGT GGTCGCCGAT TCCTGACTGT GGAGCCGGCG GCGCTCACCG CGTTGACCGC CGAGGCGATG CACGACATCG CGCACTTTCT GCGCCCCGCA CACCTGGCGC AGCTCCGGTC GATCATCGAC GACCCGGCGG CCTCGCCGAA CGATCGCTTC GTCGCGCTGG ACCTGCTGCG CAACGCCAAC ATCGCCGCCG GTGGGGTGCT TCCGATGTGC CAGGACACCG GCACCGCGAT CGTGCTGGGC AAGCGTGGCC GGCACGTGCT CACCGACGGG GCGGACGCCG AGTCGATCTC CCGGGGCGTC TGGCAGGCGT ACACCCGGCT GAACCTGCGC TACTCGCAGC TCGCCCCACT GACCATGTGG GAGGAGCGCA ACACCGGCAG CAACCTGCCG GCGCAGGTGG AGCTCTACGC AGAGGACCCC GACGGGCAGC CGGACGCGTA CAAGTTTCTC TTCATGGCCA AGGGTGGCGG CTCGGCCAAC AAGTCGTACC TGTACCAGGA GACCAAGGCG CTGCTGAATC CGACGCGGAT GATGCAGTTC CTGGAGGAGA AGCTGCGGTT GATCGGCACG GCGGCCTGCC CGCCGTACCA TCTGGCCGTG GTCATCGGCG GCACCAGCGC CGAGTACGCG CTGAAGACCG CCAAGCTCGC CTCCGCGAAA TACCTCGACG CGCTGCCGAC CGCCGGTTCG ATGACCGCGC ACGGCTTCCG TGACCTGGAG CTGGAGGCCG AGGTGTTGGA GCTGACCCGC GGCTTCGGCA TCGGCGCGCA GTTCGGTGGC CGGTACTTCT GCCACGACGT GCGGGTGGTC CGGCTGCCCC GGCACGGCGC GTCCTGCCCG GTGGCGATCG CGGTGTCCTG CTCGGCGGAC CGGCAGGCGG TCGCGAAGAT CACCCCCTCG GGAGTGTGGC TGGAGCGGCT GGAGACCGAC CCGGCCCGCT ACCTGCCCGA CGTGACGGAG TCCCAGCTGG AGTCGTCGGA GGCGGTCCGG GTTGACCTCA ACCGGCCGAT GGACGAGATC CGCGCCGAGT TGAGCAGGTA CCCGGTGAAG ACCCGGCTGT CGCTGAGCGG TCCGCTGGTC GTCGCCCGGG ACATCGCCCA CGCCAAGATC GCCGAACGGC TGGACGCCGG TGAGCCGATG CCGGCGTACC TGCGGGACCA CGCGGTCTAC TACGCCGGCC CGGCGAAGAC CCCCGAGGGC TATGCCTCCG GCTCGTTCGG CCCGACCACG GCGGGTCGGA TGGACGCGTA CGTGGAGAAG TTCCAGGCCG CCGGCGGCTC GATGGTGATG CTGGCCAAGG GCAACCGCTC CGCCCAGGTC ACTCGCTCCT GCCAGGAGCA CGGCGGCTTC TACCTCGGCT CGATTGGTGG CCCGGCGGCC CGGCTCGCCC AGGACTGCAT CAAGCACGTC GAGGTGCTCG AGTACGCCGA GCTCGGGATG GAGGCGGTCT GGCGGATCGA GGTGGAGGAC TTCCCGGCCT TCATCGTGGT TGACGACAAG GGCAACGACT TCTTCGCCGA GGTGACCAAG CCGGTCCTCA CCGTGGGCCG CCGCTGA
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Protein sequence | MGPDGSSALG FPLMSSAASF SYAPLLPTGS DQTEYRLITD EGVDVVNGPG GRRFLTVEPA ALTALTAEAM HDIAHFLRPA HLAQLRSIID DPAASPNDRF VALDLLRNAN IAAGGVLPMC QDTGTAIVLG KRGRHVLTDG ADAESISRGV WQAYTRLNLR YSQLAPLTMW EERNTGSNLP AQVELYAEDP DGQPDAYKFL FMAKGGGSAN KSYLYQETKA LLNPTRMMQF LEEKLRLIGT AACPPYHLAV VIGGTSAEYA LKTAKLASAK YLDALPTAGS MTAHGFRDLE LEAEVLELTR GFGIGAQFGG RYFCHDVRVV RLPRHGASCP VAIAVSCSAD RQAVAKITPS GVWLERLETD PARYLPDVTE SQLESSEAVR VDLNRPMDEI RAELSRYPVK TRLSLSGPLV VARDIAHAKI AERLDAGEPM PAYLRDHAVY YAGPAKTPEG YASGSFGPTT AGRMDAYVEK FQAAGGSMVM LAKGNRSAQV TRSCQEHGGF YLGSIGGPAA RLAQDCIKHV EVLEYAELGM EAVWRIEVED FPAFIVVDDK GNDFFAEVTK PVLTVGRR
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