Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_4139 |
Symbol | |
ID | 5060623 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 4707627 |
End bp | 4709093 |
Gene Length | 1467 bp |
Protein Length | 488 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640476401 |
Product | RNA-directed DNA polymerase |
Protein accession | YP_001160946 |
Protein GI | 145596649 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3344] Retron-type reverse transcriptase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCAAG ACGCGCCGCT GAATGGCGGT GCTCTGACCG AACCGGCTGG GCCGGTCCGG CGGGTAGCGG AGATGCAGGC CAAGCTTCAC CGTTGGGCGG CGGCCGGTCC GGGCCGCCGG TTCGATGACC TGTTCAACCT CGTGCACGAC CCGGCGACGC TGCTTGTGGC GTATAGCCGG GTCGCGGGCA ACCTGGGAGC CAGAACTGCC GGCGTGGACG GTATGACCGT CGCTGACGTC GAGCGGCACA TCGGTGTTCC GGGGTTCCTG GACGACCTGC GTGTCCAGGT GAAGACGGGC ACGTTCCGGC CGCTGCCGGT GCGGGAACGC AAGATCCCGA AACCGGGCGG GTCAGGCAAG GTCCGCAGAC TGGGTATTCC CACAGTTGCG GACAGGGTCG TGCAGGCGGC GCTGAAGCTC GTGCTGGAAC CGATCTTCGA GGCCGACTTC CTGCCGGTCT CGTACGGGTT CCGGCCCAAG CGGCGGGCGC AGGACGCGAT AGCGGAGATC CACTACTACG GCACCCACGG GTACCGGTGG GTCCTGGACG CGGACATCGA GGCGTGCTTC GACTCGATCG ACCACGTCGC GTTGATGGAC CGGGTCCGGA CACGGATCAA GGACAAACGC GTTCTGACAC TGGTGAAGGC GTTCCTCAAA GCCGGGATCC TCACCGAACT CGGTGACCGG CGGGACACCC ACACCGGCAC GCCGCAGGGT GGCATCCTGT CCCCGTTGTT GGCCAACATC GCGCTGACGG TGCTCGACGA GCATCTGATG GCCGGGTGGC GGCCGGACGC GACGATGGCC AGTGAGTACC GCCGAGCCCA ACTGCGCAAA CGCGGCGAAG CGACGTGGCG CCTCGTGCGC TACGCCGATG ACTTCGTCGT CCTCGTCCAC GGCGGCGAGG ACCACGCACA GGCGTTACGC GAGGACGTCG CGACGATGCT CGCGCCGCTC GGACTGAGGC TGTCACCAGC CAAGACGAGG GTGGTGCACC TGAGCGACGG GTTTGACTTC CTGGGGTTTC ACATCCAGTG GCGCCGTAAG CGAGGCACGA ACAAGTGGCA CGTGTACACC TTCATCGCAA AGCGGCCGAT CCGGTCGCTG AAGGCGAAGG TCCGTGCGCT GACACGCAGG ACATCACAGC AGGACCTCGG GACCGTGCTG ACCAGACTCA ACCTGGTCGC GCACGGTTGG GCCAACTACT TCCGGCACGC CGTGGCGAAG AACGTCTTCA GCATGTTAGA CAACTTCATC TGGAAACGGG TGATACGCAT GCTGATCGCC CGGCACCGCT GGTCGTGGAC GGACGTCCGC CGACACTTCG TCACCCCTGT CGGGCGGTGG CGACCGATCA GCGCGGGCGA GATCGAGTTG CGTCCCATCG CGGCGATACC GGTCACCCGG TACCGCTGGC GCGCAACCAG AATCCCCAGT CCGTGGTCTA CCACCGTGAA CGCCTGA
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Protein sequence | MPQDAPLNGG ALTEPAGPVR RVAEMQAKLH RWAAAGPGRR FDDLFNLVHD PATLLVAYSR VAGNLGARTA GVDGMTVADV ERHIGVPGFL DDLRVQVKTG TFRPLPVRER KIPKPGGSGK VRRLGIPTVA DRVVQAALKL VLEPIFEADF LPVSYGFRPK RRAQDAIAEI HYYGTHGYRW VLDADIEACF DSIDHVALMD RVRTRIKDKR VLTLVKAFLK AGILTELGDR RDTHTGTPQG GILSPLLANI ALTVLDEHLM AGWRPDATMA SEYRRAQLRK RGEATWRLVR YADDFVVLVH GGEDHAQALR EDVATMLAPL GLRLSPAKTR VVHLSDGFDF LGFHIQWRRK RGTNKWHVYT FIAKRPIRSL KAKVRALTRR TSQQDLGTVL TRLNLVAHGW ANYFRHAVAK NVFSMLDNFI WKRVIRMLIA RHRWSWTDVR RHFVTPVGRW RPISAGEIEL RPIAAIPVTR YRWRATRIPS PWSTTVNA
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