Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_3883 |
Symbol | |
ID | 5060361 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 4446309 |
End bp | 4447901 |
Gene Length | 1593 bp |
Protein Length | 530 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640476140 |
Product | thiamine biosynthesis protein ThiC |
Protein accession | YP_001160691 |
Protein GI | 145596394 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGAAAC GTCGCAAGGT CTACGTCGAG GGGTCGCGGC CGGATATTCA GGTGCCGTTC GCCGAGGTCG ACCTGACCGG AGACAATCCG CCGGTGCGGC TCTACGACAC TTCGGGGCCG GGATCCGAAC CGGAGGTGGG GCTGCCGCCG ATGCGCGGCA AGTGGATCGC GTCTCGTGGG GACGTCGCCC CGGTGCGGGG CGCCGGTACG CCGCTGGCGG GAGTGGACGG TCAGCGGCCG ACCCAGCTGG CGTACGCCCG GTCGGGTGTG GTGACGCCGG AGATGGAGTT CGTGGCGATC CGCGAGGGGG TCGCGCCGGA GCTGGTGCGG GAGGAGATCG CGACCGGCCG GGCCGTGCTG CCGCTGAACG TCAACCACCC GGAGTGCGAG CCGGCGATTA TCGGCAAGGC GTTCCTGGTA AAGATCAATG CGAACATCGG TACCTCGGCG GTCACCTCCT CGGTCGCCGA GGAGGTGGAG AAGCTGACCT GGGCGACCCG GTGGGGCGCG GACGCCGTGA TGGACCTGTC GACCGGCAAG CGGATCCACG AAACCCGCGA GGCGGTCGTA CGGAACTCCC CGGTGCCGAT CGGCACCGTG CCGATCTACC AGGCGTTGGA AAAGGTGGGC GGCGATCCGG CGAAGTTGAG CTGGGAGGTG TTCCGGGAGA CGGTCATCGA GCAGGCCGAG CAGGGCGTCG ACTACATGAC GGTGCACGCC GGAGTGCTGC TGTCGTACGT GCCGCTCGCC GTGGAGCGGG TGACCGGGAT CGTCTCCCGT GGTGGTTCGA TCATGGCAGC ATGGTGCCTG GCCCACCACG AGGAGAACTT CCTCTACACG AACTTCCGGG AGCTCTGCGA GATCCTGGCC CGCTACGACG TGACGTTCTC GCTCGGCGAC GGGCTGCGCC CCGGCTCCAT CGCGGACGCC AACGACGAGG CGCAGTTCGC CGAACTGAGG ACCCTCGGTG AGCTGACGAA GGTCGCCTGG GAGCACGATG TCCAGGTGAT GATCGAGGGC CCGGGGCACG TACCAATGCA CAAGATCAAG GAGAATGTGG ACCTTCAGCA GGAGTGGTGT CACGAGGCGC CGTTCTACAC GCTCGGCCCA CTGAGTACGG ACATCGCGCC GGCGTACGAC CACATTACGT CCGCCATCGG CGCGGCGATG ATCGGAATGT TCGGTACGGC GATGCTCTGC TATGTCACCC CGAAGGAGCA CCTCGGGCTG CCGGACCGGG ACGACGTGAA GGCCGGCGTG ATCGCGTACA AGATCGCTGC GCATGCCGCG GACCTGGCCA AGGGGCACCC GGGGGCCCAG GCGTGGGACG ACGCGCTCTC CAAGGCACGA TTCGAGTTCC GCTGGGAGGA CCAGTTCAAC CTCGCGTTGG ACCCGGAGAC CGCGCGCGCC TACCACGACG CCACCCTGCC CGCCGAACCG GCGAAGACGG CCCACTTCTG TTCGATGTGC GGCCCGAAGT TCTGCTCCAT GAAAATCACC CAGGAGCTAA AGGAGTACGC GGCGCGTGGC ATGAAGGACA AGTCAGAGGA GTTCGTAGCC TCCGGCGGTC GCGTCTACCT TCCGCTGGCC TGA
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Protein sequence | MQKRRKVYVE GSRPDIQVPF AEVDLTGDNP PVRLYDTSGP GSEPEVGLPP MRGKWIASRG DVAPVRGAGT PLAGVDGQRP TQLAYARSGV VTPEMEFVAI REGVAPELVR EEIATGRAVL PLNVNHPECE PAIIGKAFLV KINANIGTSA VTSSVAEEVE KLTWATRWGA DAVMDLSTGK RIHETREAVV RNSPVPIGTV PIYQALEKVG GDPAKLSWEV FRETVIEQAE QGVDYMTVHA GVLLSYVPLA VERVTGIVSR GGSIMAAWCL AHHEENFLYT NFRELCEILA RYDVTFSLGD GLRPGSIADA NDEAQFAELR TLGELTKVAW EHDVQVMIEG PGHVPMHKIK ENVDLQQEWC HEAPFYTLGP LSTDIAPAYD HITSAIGAAM IGMFGTAMLC YVTPKEHLGL PDRDDVKAGV IAYKIAAHAA DLAKGHPGAQ AWDDALSKAR FEFRWEDQFN LALDPETARA YHDATLPAEP AKTAHFCSMC GPKFCSMKIT QELKEYAARG MKDKSEEFVA SGGRVYLPLA
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