Gene Strop_3423 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_3423 
Symbol 
ID5059892 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp3927331 
End bp3928263 
Gene Length933 bp 
Protein Length310 aa 
Translation table11 
GC content69% 
IMG OID640475672 
ProductABC transporter related 
Protein accessionYP_001160232 
Protein GI145595935 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID[TIGR01288] ATP-binding ABC transporter family nodulation protein NodI 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.00331391 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.124939 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCACGG CTCAACCACT CATCCAGGCG CGGGGGCTGG TGAAGCGGTT CGGCGGCTTC 
ACCGCGGTCG ACGCCATCGA CGTTGCGGTT CCGGCTGGGG AGGCGTTCGG TTTCCTCGGG
CCCAACGGCG CCGGGAAGTC GTCCACCATG CGCATGATCG GTTGTGTCTC GCCGCCCAGC
GAAGGGGAGC TGCGCATCCT CGGCATGGAT CCGGTGCGAG ACGGGCCGGC GATCCGGGCC
CGCCTCGGTG TCTGCCCCCA GCTCGACACG CTCGACCCGG AGCTGACCGT CCGGGAAAAT
CTGATCACCT ACGCCCGCTA CTTCGGTATC GCCCGCCGGG TGGCTCGGCT GCGCGCCACC
GAGCTGCTCG ATTTCGTGCA GCTCAGCGAG CGGGCCGACA GTAAGGTGGA GCCGCTCTCC
GGCGGCATGA AGCGACGGCT CACCATCGCC CGCGCGCTCG TCAACGAGCC CGAGATCGTG
CTGCTGGACG AGCCGACCAC CGGTCTCGAC CCACAGGCCC GGCACCTGGT CTGGGAGCGG
CTGTTCCAGC TCAAGCAGCA GGGCGTCACG CTGGTGCTCA CCACGCACTA CATGGACGAG
GCCGAGCAGC TCTGCGACCG TCTGGTGGTG ATGGACGGTG GACGGATCGT CGCCGAAGGC
TCCCCCCGCG TGCTGATCGA GCAGCACTCC ACCCGCGAGG TGGTCGAGCT GCGCTTCGCG
GGCGAGTCGC AGGAGCCGTT CGCCAGCAAG CTTGACCAGC TCGGGGAACG GGTCGAGGTG
CTGCCCGACC GGATCCTGCT CTACGTACCC GACGGCGACT CGGCGGTGGC CGAGGTGACC
GCGCTCGGCC TGCACCCGAT CAACGTGTTG GTGCGACGCA GCGGCCTGGA GGATGTCTTT
CTGCACCTCA CCGGCCGCAC TTTGATCGAC TGA
 
Protein sequence
MTTAQPLIQA RGLVKRFGGF TAVDAIDVAV PAGEAFGFLG PNGAGKSSTM RMIGCVSPPS 
EGELRILGMD PVRDGPAIRA RLGVCPQLDT LDPELTVREN LITYARYFGI ARRVARLRAT
ELLDFVQLSE RADSKVEPLS GGMKRRLTIA RALVNEPEIV LLDEPTTGLD PQARHLVWER
LFQLKQQGVT LVLTTHYMDE AEQLCDRLVV MDGGRIVAEG SPRVLIEQHS TREVVELRFA
GESQEPFASK LDQLGERVEV LPDRILLYVP DGDSAVAEVT ALGLHPINVL VRRSGLEDVF
LHLTGRTLID