Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_3158 |
Symbol | |
ID | 5059623 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 3624297 |
End bp | 3624863 |
Gene Length | 567 bp |
Protein Length | 188 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640475406 |
Product | sigma-70 region 4 domain-containing protein |
Protein accession | YP_001159970 |
Protein GI | 145595673 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02983] RNA polymerase sigma-70 factor, sigma-E family |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.579864 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0761655 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGATGG ACCGCCTCTC CCAAGGATCG GCTCGTGTGG ACCCTTTGCT GACAGAGTTC GAAACGTTCG TCCGGACCCG TACGCCCGCG CTTTTGCGGT CGGCCTACCT TCTGACGGGT GACCAGCACC TTGCCGAGGA TCTCGTTCAG TCGGCCCTCG CGCGGACACA CCGGTCGTGG AAACGGCTGC ATGAGAGTGG GAATGCCGAA GCCTACACCC GCAAGACTAT GTACCACCTC CAAGTCTCCT GGTGGCGACG TCGACGTGTA GGCGAGTCGA TGCCGGGTGA CTTGCCTGAT CGAAGCGACA GCAGTTCGGA TTCAGACGCC GCGCACCAGA CCATCATGCG GCTCACGTTG CGGAACGCCT TGGCCCAGCT CTCCGCGAAG CAGCGGGCGG TGCTGGTGCT GCGCTTCTTC GAGGACCGTA CCGAAATGGA GGCCGCCGGC CTGCTCGGCG TCACTGTCGG CACTGTCAAG AGCCAGACCT CCAAGGCCTT GGCCAAGTTA CGCACTGTCG CACCAGAGCT CGGCGAACTG TACGTCTCGG AAGGAAGCGC CCGATGA
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Protein sequence | MSMDRLSQGS ARVDPLLTEF ETFVRTRTPA LLRSAYLLTG DQHLAEDLVQ SALARTHRSW KRLHESGNAE AYTRKTMYHL QVSWWRRRRV GESMPGDLPD RSDSSSDSDA AHQTIMRLTL RNALAQLSAK QRAVLVLRFF EDRTEMEAAG LLGVTVGTVK SQTSKALAKL RTVAPELGEL YVSEGSAR
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