Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_3105 |
Symbol | |
ID | 5059569 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | + |
Start bp | 3557214 |
End bp | 3559055 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640475354 |
Product | ATP-dependent DNA helicase RecQ |
Protein accession | YP_001159919 |
Protein GI | 145595622 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0514] Superfamily II DNA helicase |
TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family [TIGR01389] ATP-dependent DNA helicase RecQ |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.34837 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.152736 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCTCCC CCACCGACCA GCAGCCCGCC GCGTTGGAAA CGCTGCGGCG TGTCTTCGGC TACGACGCCT TCCGGGGCTT CCAGCAGGAG GTCATCGAGC ACGTGACGGC CGGCGGGGAC GCCCTGGTAC TGATGCCGAC CGGCGGTGGC AAGTCGCTCT GCTACCAGAT CCCGGCGCTG CTGCGCGACG GCGTCGCGGT GGTCGTGTCA CCGTTGATCG CGCTGATGCA GGACCAGGTT GACGCGCTGA CCGCGGTCGG GGTCCGAGCC GGCTTCCTCA ACTCGACGCT TGACGTCGAC GCCCGCCGCG CCGTCGAGCG GGCCTTCGTC GCCAGGGAGC TGGATCTGCT CTACCTCGCT CCGGAGGCCC TGGGCACCCG GGGCGTGCAG CACCTGCTCG ACCAGGGGCG GATCAGCCTC TTCGCGATCG ACGAGGCGCA CTGCGTGTCG CAGTGGGGGC ACGACTTCCG CCCGGACTAC CTGGCCCTGT CGATGCTGCA CGAACGCTGG CCGGGGGTGC CTCGGATCGC GTTGACGGCC ACCGCGACCA GCGCCACCCG GGCCGAGATC TCGACCCGGC TCCAGCTCAC CTCGGCCCGG CACTTCGTCG CCAGCTTCGA CCGGCCCAAC ATCCAGTACC GCATCGCGGC GAAGCGGGAG CCGAAGCGGC AACTACTGGC CCTGCTCCGT GACGAACACC CGGGGGACGC CGGCATCATC TACTGCCTGT CCCGGGCCAC CGTGGAGAAG ACCGCGGAGT TTCTGGTCGA CAACGGTGTA ACCGCGCTGC CCTACCACGC CGGCCTGGAC GCGGTCACCC GCGCCCGGCA CCAGCAGCGC TTCCTGCGGG AGGACGGCGT GGTCATGGTC GCGACGATCG CGTTCGGGAT GGGCATCGAC AAGCCCGACG TGCGGTTCGT CGCCCACCTT GACCTACCGA AGTCGGTGGA GGGCTACTAC CAGGAGACCG GTCGCGCCGG GCGGGACGGC CTACCGGCGA CAGCCTGGCT CGCCTACGGC CTGACGGATG TGGTGCAGCA GCGCCGGCTG ATCGACACCT CGGAGGGGGA CCCGGCGCAC CGGCGAAATC TCGCCACCCA TCTGGAGGCG ATGCTCGCGC TCTGTGAGAC GGTCCGCTGC CGCCGGGCGC AGCTCCTGGA CTACTTCGGC GAGACCGCCC CCGCCTGCGG CAACTGCGAC ACCTGCCTAC AGCCACCCGA GTCGTGGGAC GGCACGATCG CCGCGCAGAA GCTACTCTCC ACGATCTACC GGCTCGACCG GGAGCGCAGC CAACGCTTCG GTGCCGGGCA CTGCGTCGAC ATCCTTCTCG GCCGCGCCAC CGACAAGATC CAGCAGCACC GGCACGACTC CCTGACGGTC TTCGGGATCG GCACCGACCT GAGCGAGGCG GAGTGGCGGG GGGTGGTCCG GCAGCTGCTC GCCGAGGGGC TACTGGCGGT CGAGGGCGAC TACGGCACCC TTGCCCTCAC CGACACCAGC GCGGAGGTGT TGGGCCGACG TCGCACCGTC ATGCTGCGCC GCGAGCCGGC CCGGAAGGCC CGACCGGCGA AGCCACGCGG CGCGGCCACC GTGGTCGCCG AGCTGACGCC GGCCGCCGCC GAGGCCTTCG AACGGCTACG CGCCTGGCGG GCCGCCACCG CCAAGGAGCA GGGGGTGCCG GCGTACGTGA TCTTCCACGA CGCCACGCTG CGACAGATCG CCACCGACGC CCCCGCCGAC CTGGCCGACC TGGCCAAGGT CGGCGGCGTC GGTGAGGCGA AGCTGGCGAA GTACGGCGAG CAGGTGCTGA CCGTACTCGC CGACGACCCC CACCCTGCTT GA
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Protein sequence | MSSPTDQQPA ALETLRRVFG YDAFRGFQQE VIEHVTAGGD ALVLMPTGGG KSLCYQIPAL LRDGVAVVVS PLIALMQDQV DALTAVGVRA GFLNSTLDVD ARRAVERAFV ARELDLLYLA PEALGTRGVQ HLLDQGRISL FAIDEAHCVS QWGHDFRPDY LALSMLHERW PGVPRIALTA TATSATRAEI STRLQLTSAR HFVASFDRPN IQYRIAAKRE PKRQLLALLR DEHPGDAGII YCLSRATVEK TAEFLVDNGV TALPYHAGLD AVTRARHQQR FLREDGVVMV ATIAFGMGID KPDVRFVAHL DLPKSVEGYY QETGRAGRDG LPATAWLAYG LTDVVQQRRL IDTSEGDPAH RRNLATHLEA MLALCETVRC RRAQLLDYFG ETAPACGNCD TCLQPPESWD GTIAAQKLLS TIYRLDRERS QRFGAGHCVD ILLGRATDKI QQHRHDSLTV FGIGTDLSEA EWRGVVRQLL AEGLLAVEGD YGTLALTDTS AEVLGRRRTV MLRREPARKA RPAKPRGAAT VVAELTPAAA EAFERLRAWR AATAKEQGVP AYVIFHDATL RQIATDAPAD LADLAKVGGV GEAKLAKYGE QVLTVLADDP HPA
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