Gene Strop_3098 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_3098 
Symbol 
ID5059562 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand- 
Start bp3550587 
End bp3551591 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content67% 
IMG OID640475348 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_001159913 
Protein GI145595616 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.0456074 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.202712 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCATCC GGGTTGGCAT CAACGGCTTC GGCCGGATCG GCCGTAACTT CTTCCGGGCA 
GTGCTGGCGT CCGGCGCTGA CATCGAGGTC GTGGCGGTCA ACGACCTGAC CGACAACGCG 
ACGCTCGCCC ACCTTGTCAA GTACGACAGC ATCCTCGGCC GCCTGCCGCA GGAGGTGAAG 
GCCAGCGCGG ACGAGATCAC CGTGGGCGGC AAGACCGTCA AGGCATACGC CGAGAAGGAC 
CCGGCGAAGC TGCCCTGGGG CGAGCTGGGC GTGGACGTGG TCATCGAGTC CACCGGTTTC 
TTCACCGACG CCACCAAGGC GAAGGCGCAC GTCGACGGCG GTGCCAAGAA GGTGATCATC 
TCGGCGCCGG CGAAGAACGA AGACGTCACC GTCGTGATGG GCGTCAACCA GGCGGAGTAC 
GACCCGGCCA AGCACACCGT CATCTCCAAC GCCTCCTGCA CCACCAACTG TCTGGCGCCG 
ATGGCGAAGG TCCTGCAGGA CACGTTCGGC ATCGAGCAGG GCCTGATGAC CACCATCCAC 
GCGTACACCC AGGACCAGAA CCTCCAGGAC GCTCCGCACA AGGACCTGCG TCGGGCCCGG 
GCCGCCGCGC TGAACATCGT GCCGACCTCC ACCGGCGCGG CGAAGGCGAT CGGCCTGGTG 
CTGCCGGAGC TCAAGGGCCG GCTGGACGGC TACGCGCTGC GCGTGCCGAT CCCGACCGGG 
TCCGCCACCG ACCTGACCGT CACCGTCGGC CGGGAGACCA CGGTGGACGA GGTCAACGCC 
GCGATGAAGG CGGCCGCCAA CGGCCCGCTC AACGGCGTCC TGTCCTACAG CGAGGACCCG 
ATCGTCTCGG CCGACATCGT CACCGACCCG GCGTCCTGCA TCTTCGACGC TCCGCTGACC 
AAGGTGATCG GCAACCAGGT GAAGATCGTC GGCTGGTACG ACAACGAGTG GGGCTACTCG 
AACCGCCTCG TGGATCTCGT GAAGCTGGTT GGTCAGTCGC TGTGA
 
Protein sequence
MTIRVGINGF GRIGRNFFRA VLASGADIEV VAVNDLTDNA TLAHLVKYDS ILGRLPQEVK 
ASADEITVGG KTVKAYAEKD PAKLPWGELG VDVVIESTGF FTDATKAKAH VDGGAKKVII 
SAPAKNEDVT VVMGVNQAEY DPAKHTVISN ASCTTNCLAP MAKVLQDTFG IEQGLMTTIH 
AYTQDQNLQD APHKDLRRAR AAALNIVPTS TGAAKAIGLV LPELKGRLDG YALRVPIPTG 
SATDLTVTVG RETTVDEVNA AMKAAANGPL NGVLSYSEDP IVSADIVTDP ASCIFDAPLT 
KVIGNQVKIV GWYDNEWGYS NRLVDLVKLV GQSL