| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_2926 |
|---|
| Symbol | |
|---|
| ID | 5059390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 3346132 |
|---|
| End bp | 3347682 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640475177 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001159742 |
|---|
| Protein GI | 145595445 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.102472 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACTCTC GGTCCCGCCG GTCATCGCCG TCCCGACGGG CCGCCCTGAT CAGCCTCTGC
ACCGCCGCCA CACTGGTGTG GCTCGCGTTC TCCAACCTTG GGGTGGCACT GCCGACCATC
GCCAACGAGT TGAACGTCAA CCTGACCGAT ATGCAGTGGG CGAACAACGC CTTGAGTATC
GCCTGCGGAA CACTCCTGCT GGCCGGCGGT CGCCTCACCG ACCTGTACGG CCACCGAAAG
ATGCTGCTGC TCGGCCTGCT GATCTTCGGC GTCGCCGCCC TGGCGACTGC CTTCGCTCCC
AACCTCGCCG GCCTGGTCGC CGGCCGTGCG GTGATGGGCG TCGGTAGCGC CCTCATCCTG
CCCGCCACGC TGGCGATGAT CCCGGCGCTC TTCGAGCGCG CCGAGCAGCC ACCAGCCTTC
GCCGCATGGG CGGCGGCGAC CTGGGCCGGG CAGGCGATCG GGCCGGCTGT CGGTGGAACC
CTGACCACCC TGCTCGGCTG GCGGTCGCTG TTCTGGTTGA CCGCACCGGT GGTCCTCGTC
TTGTACGTCG TGACCAAACG GAACGCACCC GAGGCACAGC AGGGCCGGGG ACGGATCGAC
CTGATCGGGT TGGTCACCGG GGCCGGGGCC GTACTGTGCC TGCTCTTCGC GCTGACCGAG
GGGCAGCAGG CCGGTTTCAA CGATCCGCTG ATCATTGCTC TCTTCGGCGC CACCGTGGTG
TTCGCCGCGG CGTTCGTGCT CGTCGAGTTG AGGATCACCG ACCCGCTGGT AGATCTACGG
CTGTTCCGCA CCCGCAGCTT TGACGGCGCT CTCATCGTCA ACCTGACGAT GAACATGTCC
TTCGCCGGCA CGCTTTTCGT GCTGTCTCTC TACCTGCAGG ACGTCCGGGG CTACAGCGCG
TTCGTGGCCG GCCTGCTCCT GGTTCCGGCC GCCGGAACGA TCCTGGTGTT CAACTCCGTC
GGCGCACGGG TCGTCACCCG ACACGACGCC CGCTCCCCCT CGGTCTGGGG CCTCGTCCTG
GTCGGCGTCG GCTGCTTCGC CATCAGCGCC CTCCTACCCT CCCTGTCGGT AGTCGCGGTG
ATCGTGGGCC TACTCATCAT CGGTGTCGGA CTGGGCCTGC TCTCCGTGCC CGTGGCTGAC
ACCATCGTCG GGGGCCCACC GCCCGCCCTC GCCGGCACCG CGTCCGGGGT CTACAAGACC
AGCAGCATGC TGGGGGGCGC GCTCGGTGTC GTCCTGCTGA CCGCCGCAAC CACCCGATTC
GGCCGGGCCG AGGCGGCCCC GGTGAGCACC GCGGCCGGGC TCACCGAAAA CGAGTCAAAC
CAGGTCGTCA ACGCGCTGAC CAACTCCCAG ACGGCGAACG CCATCCTCGA CAAGCTGCCG
GCGAACGAGC GGAGCCTCGT GATCGATGCC TACCACCAGG CCTTCTCGGA CGGGGTGTCG
ACGGCCCTCG TACTCGGTGG TGTGATCGCG GTGATCGGCG CGGTGCTGGC CGGCTGGATC
TGGCCCCGCC ACCGAAAGGG CCGCGACACG CGGCAACCCC AGCAGGGTTG A
|
|---|
| Protein sequence | MHSRSRRSSP SRRAALISLC TAATLVWLAF SNLGVALPTI ANELNVNLTD MQWANNALSI
ACGTLLLAGG RLTDLYGHRK MLLLGLLIFG VAALATAFAP NLAGLVAGRA VMGVGSALIL
PATLAMIPAL FERAEQPPAF AAWAAATWAG QAIGPAVGGT LTTLLGWRSL FWLTAPVVLV
LYVVTKRNAP EAQQGRGRID LIGLVTGAGA VLCLLFALTE GQQAGFNDPL IIALFGATVV
FAAAFVLVEL RITDPLVDLR LFRTRSFDGA LIVNLTMNMS FAGTLFVLSL YLQDVRGYSA
FVAGLLLVPA AGTILVFNSV GARVVTRHDA RSPSVWGLVL VGVGCFAISA LLPSLSVVAV
IVGLLIIGVG LGLLSVPVAD TIVGGPPPAL AGTASGVYKT SSMLGGALGV VLLTAATTRF
GRAEAAPVST AAGLTENESN QVVNALTNSQ TANAILDKLP ANERSLVIDA YHQAFSDGVS
TALVLGGVIA VIGAVLAGWI WPRHRKGRDT RQPQQG
|
|---|
| |