| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_2897 |
|---|
| Symbol | |
|---|
| ID | 5059360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 3314712 |
|---|
| End bp | 3316091 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640475148 |
|---|
| Product | polymorphic outer membrane protein |
|---|
| Protein accession | YP_001159714 |
|---|
| Protein GI | 145595417 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01376] Chlamydial polymorphic outer membrane protein repeat |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.966498 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.981249 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCATC CGCTCCACGA TCACGTACCC GAGCGGCCCG GCGCGGGCCG CGCCAGATCC
CGATGGTGGA CTGTCGGGCT GGCCGGGATG ACCGGCCTGG CCCTGACCGC CGCGGGCGTC
GCCGCCGGCC CGGCCGCTGA CGCTGTCGCA CGTACCCCCA CCACCGCCGG AGATCGGCCG
TCCGCGGACG ATGACCGCCG CCAACACGAT GACGGCAAAC TCGACGACAA AGACAAGAAC
AGGGGTGACA AGGAGGAGGG GAAGAAGCCG AAGGGTGTAC CCGTCCCCTG TGAGGCGGAC
GCCCTGATCG CCGCGATCAC CCTCGCCAAC GCCCGCGGCG GAGCCGTGCT CGACCTCGCC
AAGGACTGCA CCTACCTGCT CACCGTCGAC ATCGAGGGTG CTGGTCTGCC GGCGATCACC
ACCCCGATCA CCCTCAACGG GAAGAACTCC ACCATCACCC GCGCGGCCGC CGTCGACCCA
TTCCGGATCA TCACCGTCGA CACTGGCGGC CGGCTCAACC TCAACCACCT GAAGATCACC
GGTGGCCAGA CCACCGATAA CGGTGGGGGA ATCCTTGTCA ACACTGGCGG AGAACTGACT
GTCAGACACG GCGCCATCAC CCGCAACATC GCCAGCGCTG ACGGCGGTGG CATCTCCAAC
AACGGCACCA CCCGAATTGA TAACTCCACA GTAGATAAGA ACACTGCTGG TTCTTCCGGC
GGAGGTATCG CCAGCACCGC CGCACTCGAA ATCAGCAAGT CCCATATGTC TACTAATACC
GCGGACCGTG GGGGTGGAGT AAGTAGTGCG GAAGGAGTAG TCCGGATCGA GCGCAGCGCT
ATTGCTGCCA ATCATGCTCA AAGTCTTGCC GGTGGTCTTC TTGTAGAAAG TGGCGTCGGA
ATTGTCACGG ATACCCGTAT CACGTACAAT GCTGCCGCCG ACTCTGGCGG TATCTTCGTA
GAAGGTGGGC AATTCACACT CCGGCGCGGC GCTCTTGCCG GTAACACCGC CAGCGAGAGC
GATGGTGGTG GACTGCGGTC AAATCTAGAA GTCTCCGTTG TCATCGAGGA CAGTCTGGTT
AAGCACAACA CCGCCAATGC CGACGGTGGT GGTATCTACA GTGCCGGCAA TCTGGTTTTG
CGACACACAA AGATTATCGG CAACCAGGCA GGTGACCAGG GTGGTGGCAT AAATAACGAA
TCCACCTCAA CGGCTACCCT CTTTGCTACC GAGGTGGTCA AGAACACGGC CGTCGTAGAA
GGTGGGGGTA TCTTCAACGA GCCCAACGGA ATAGTCGAGT TGAACGTCGC GACCGGCACG
GTCGTGATCA AGAACCGACC GGACAACTGC TCCGGCGACG TACCTGGTTG CGCCGGATAG
|
|---|
| Protein sequence | MNHPLHDHVP ERPGAGRARS RWWTVGLAGM TGLALTAAGV AAGPAADAVA RTPTTAGDRP
SADDDRRQHD DGKLDDKDKN RGDKEEGKKP KGVPVPCEAD ALIAAITLAN ARGGAVLDLA
KDCTYLLTVD IEGAGLPAIT TPITLNGKNS TITRAAAVDP FRIITVDTGG RLNLNHLKIT
GGQTTDNGGG ILVNTGGELT VRHGAITRNI ASADGGGISN NGTTRIDNST VDKNTAGSSG
GGIASTAALE ISKSHMSTNT ADRGGGVSSA EGVVRIERSA IAANHAQSLA GGLLVESGVG
IVTDTRITYN AAADSGGIFV EGGQFTLRRG ALAGNTASES DGGGLRSNLE VSVVIEDSLV
KHNTANADGG GIYSAGNLVL RHTKIIGNQA GDQGGGINNE STSTATLFAT EVVKNTAVVE
GGGIFNEPNG IVELNVATGT VVIKNRPDNC SGDVPGCAG
|
|---|
| |