Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_2194 |
Symbol | |
ID | 5058657 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 2483463 |
End bp | 2484248 |
Gene Length | 786 bp |
Protein Length | 261 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640474457 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001159023 |
Protein GI | 145594726 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.0761637 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCAGAGA ACGAACAGCG AGTAGCGCTG GTCACCGGTG GAACCAGTGG AATCGGCTTG GCGGTCGCGG AGACGCTCGC CCGCCGCGGC CTCAGGGTCT TTCTCTGCGC GCGAACTCCG GAGGCCGTCG AGGAGACGGT CGGCAAGCTA CGGGCCGACG GCTACCCGGC CGACGGTGTC GTCGCGGATG TCCGGCTCCA GGCCGATGTC GAGCGTCTCG TGGGCGTCGT CGTCCAGCGG TACGGACACG TTGATGTCCT GGTGAACAAC GCCGGGCGCA GCGGCGGCGG GGTGACCGCC ACCATCGCCG ACGAGCTCTG GTACGACGTC ATCGAGACCA ACCTGAACAG CGTCTTCCGG GTCACCCGCG AGGTACTCCG GTCGGGACGG CTGCTGGAGC GCGGTTGGGG ACGAATCATC AGCATCGCGT CGACCGGGGG CAAGCAGGGG GTGGTGCTCG CCGCGCCCTA CTCCGCGTCC AAGCACGGAG TGGTCGGCTT CACCAAGGCG CTGGGGCTGG AGCTAGCGAA GACCGGGGTC ACCGTCAACG CGGTCTGCCC CGGCTACGTC GAGACGCCGA TGGCGCAACG GGTACGGCAA GGGTACGCCG CCCACTTCGA GACGACCGAA GCGGCGATCC TGGAGCGATT CCAGGCGAAG ATACCGCTGG GCCGCTACTC CACCCCCGAG GAGGTAGCCG GACTTGTCGG ATACCTGGTC AGCGATCTTG CCGCGCCGAT CACCGCGCAG GCGATCAACG TCTGTGGCGG TCTCGGAAAC TACTGA
|
Protein sequence | MAENEQRVAL VTGGTSGIGL AVAETLARRG LRVFLCARTP EAVEETVGKL RADGYPADGV VADVRLQADV ERLVGVVVQR YGHVDVLVNN AGRSGGGVTA TIADELWYDV IETNLNSVFR VTREVLRSGR LLERGWGRII SIASTGGKQG VVLAAPYSAS KHGVVGFTKA LGLELAKTGV TVNAVCPGYV ETPMAQRVRQ GYAAHFETTE AAILERFQAK IPLGRYSTPE EVAGLVGYLV SDLAAPITAQ AINVCGGLGN Y
|
| |